RepGene

You Only Need One Gene Representation

• Author: XXX
• Date: 2025-11-11
• Version: v0.17.0

Model Architecture Diagram with Data Flow

Description

This project is based on Python 3.11 and developed using PyCharm on Windows 11.

• Desktop: Windows 11, NVIDIA GeForce RTX 4070 Super 12GB, PyCharm 2024, Python 3.11, PyTorch 2.1.0, CUDA 12.1, [2025]
• The original embeddings and downstream evaluation are performed using A100.

Installation

Requirements: python=3.11, pytorch=2.1.0, NVIDIA GPU

Refer to requirements.txt

Get full data-sets & models

Please get the complete models and test dataset from the following link.

https://pan.xunlei.com/s/xxx

Use examples

• Use repgene/model/modelv17c20/get_encoded_embeddings.py.