v1.1.0

What's Changed

⚠️ Breaking Changes

• CLI Consolidation: Removed papi leann-index and papi search-index commands
  • Use papi index --backend {pqa|leann|search} instead
  • Migration: papi leann-index → papi index --backend leann
  • Migration: papi search-index --rebuild → papi index --backend search --search-rebuild

Improvements

• Refactored CLI commands into modular paperpipe/cli/ subpackage for better maintainability
• Updated MCP server configuration: now uses paperqa_mcp_server and leann_mcp as commands

Documentation

• Added comprehensive agent documentation (docs/agent/ with architecture, code conventions, testing patterns)
• Updated README and all tests for new MCP command names
• Updated entry point: papi = paperpipe.cli:cli

Full Changelog: v1.0.0...v1.1.0