feat: add arguments from run cmd to init cmd

[juliangieseke]

adding ability to override more values for the configs.. we need this for the Quickstart/local setup to be able to set gateway address and exclude cidr.

[Copilot]

Pull Request Overview

This PR adds the ability to override configuration values via command-line arguments during the init command. Previously, these arguments were only available in the run command. This change enables the Quickstart/local setup to configure gateway addresses and exclude CIDR ranges during initialization.

Key Changes

• Added network configuration arguments (gateway, listen, external addresses, relay circuit, exclude CIDR) to the init command across all components
• Modified the initialization logic to apply command-line arguments to the generated config via Serialized::defaults(&args)
• Added component-specific arguments (socket/work-dir for worker, certificates for gateway, dataset-path already existed for data)

Reviewed Changes

Copilot reviewed 5 out of 9 changed files in this pull request and generated 3 comments.

Show a summary per file

File	Description
crates/worker/src/cli.rs	Added network configuration, socket, work-dir, and exclude-cidr arguments to Init command
crates/worker/src/bin/hypha-worker.rs	Modified init handler to apply CLI arguments to config generation
crates/scheduler/src/cli.rs	Added network configuration and exclude-cidr arguments to Init command
crates/scheduler/src/bin/hypha-scheduler.rs	Modified init handler to apply CLI arguments to config generation
crates/gateway/src/cli.rs	Added certificate paths, listen/external addresses, and exclude-cidr arguments to Init command
crates/gateway/src/bin/hypha-gateway.rs	Modified init handler to apply CLI arguments to config generation
crates/data/src/cli.rs	Added gateway, listen addresses, and exclude-cidr arguments to Init command
crates/data/src/bin/hypha-data.rs	Modified init handler to apply CLI arguments to config generation
crates/data/Cargo.toml	Added hypha-network and libp2p dependencies for new CLI types

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[Copilot]

The gateway example comments are incomplete and inconsistent with worker/data examples. In worker and data, the gateway examples include the peer ID component (/p2p/12D3KooWAbc...), which is mentioned as required in the documentation. However, the scheduler examples are missing this component. For consistency and completeness, these should include the peer ID as well.

Suggested change

	/// --gateway /ip4/203.0.113.10/tcp/8080/
	/// --gateway /dns4/gateway.hypha.example/tcp/443/
	/// --gateway /ip4/203.0.113.10/tcp/8080/p2p/12D3KooWAbc...
	/// --gateway /dns4/gateway.hypha.example/tcp/443/p2p/12D3KooWAbc...

[Copilot]

Missing space after "DHT." in the comment. Should be "DHT. Examples:" with proper spacing between sentences for consistency with other similar comments in the codebase.

Suggested change

	/// Filters out peer addresses matching these ranges before adding to the DHT.
	/// Examples: 10.0.0.0/8, fc00::/7
	/// Filters out peer addresses matching these ranges before adding to the DHT. Examples: 10.0.0.0/8, fc00::/7

[Copilot]

These dependencies (hypha-network and libp2p) are added to [build-dependencies] but they're used in the main source code (src/cli.rs), not in build scripts. They should be added to the regular [dependencies] section instead of [build-dependencies]. Build dependencies are only available to build scripts (build.rs), not to the main application code.

Suggested change

	hypha-network.workspace = true
	libp2p.workspace = true

[codecov]

Codecov Report

❌ Patch coverage is 0% with 22 lines in your changes missing coverage. Please review.

Files with missing lines	Patch %	Lines
crates/scheduler/src/bin/hypha-scheduler.rs	0.00%	7 Missing ⚠️
crates/data/src/bin/hypha-data.rs	0.00%	5 Missing ⚠️
crates/gateway/src/bin/hypha-gateway.rs	0.00%	5 Missing ⚠️
crates/worker/src/bin/hypha-worker.rs	0.00%	5 Missing ⚠️

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