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Daniel Beck edited this page Sep 7, 2013 · 8 revisions
  1. microbePlot requires R version 2.15 or later

  2. Within R, install the required packages.
    source("http://bioconductor.org/biocLite.R")

    biocLite("impute")

    install.packages(c("shiny","vegan","WGCNA","qgraph","gplots"))

  3. To run locally, use the following commands within R.
    library(shiny)

    runApp("/path_to_microbePlot_folder")

Information and instructions for hosting Shiny applications on a server can be found at http://www.rstudio.com/shiny/.

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