problem installing igraph #1188
Description
I cannot upgrade igraph and it is preventing me from installing tidygraph and ggraph
devtools::install_github("igraph/rigraph")
vendor/cigraph/src/io/graphml.c:46:10: fatal error: libxml/globals.h: No such file or directory
46 | #include <libxml/globals.h>
| ^~~~~~~~~~~~~~~~~~
compilation terminated.
make: *** [/usr/lib/R/etc/Makeconf:191: vendor/cigraph/src/io/graphml.o] Error 1
ERROR: compilation failed for package ‘igraph’
- removing ‘/home/sherinepc/R/x86_64-pc-linux-gnu-library/4.3/igraph’
- restoring previous ‘/home/sherinepc/R/x86_64-pc-linux-gnu-library/4.3/igraph’
Warning message:
In i.p(...) :
installation of package ‘/tmp/RtmpWPv1rx/file4d5c84cab6583/igraph_2.0.1.9002.tar.gz’ had non-zero exit status
R version 4.3.2 (2023-10-31)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 22.04.3 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.10.0
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.10.0
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
time zone: Africa/Cairo
tzcode source: system (glibc)
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] miniUI_0.1.1.1 compiler_4.3.2 promises_1.2.1 Rcpp_1.0.12 stringr_1.5.1 callr_3.7.3
[7] later_1.3.2 yaml_2.3.8 fastmap_1.1.1 mime_0.12 R6_2.5.1 curl_5.2.0
[13] knitr_1.45 htmlwidgets_1.6.4 desc_1.4.3 profvis_0.3.8 shiny_1.8.0 rlang_1.1.3
[19] cachem_1.0.8 stringi_1.8.3 httpuv_1.6.14 xfun_0.41 fs_1.6.3 pkgload_1.3.4
[25] memoise_2.0.1 cli_3.6.2 magrittr_2.0.3 ps_1.7.6 processx_3.8.3 digest_0.6.34
[31] rstudioapi_0.15.0 xtable_1.8-4 remotes_2.4.2.1 devtools_2.4.5 lifecycle_1.0.4 vctrs_0.6.5
[37] evaluate_0.23 glue_1.7.0 urlchecker_1.0.1 sessioninfo_1.2.2 pkgbuild_1.4.3 rmarkdown_2.25
[43] purrr_1.0.2 tools_4.3.2 usethis_2.2.2 ellipsis_0.3.2 htmltools_0.5.7
sudo apt install libglpk-dev libgmp-dev libxml2-dev
Reading package lists... Done
Building dependency tree... Done
Reading state information... Done
libgmp-dev is already the newest version (2:6.2.1+dfsg-3ubuntu1).
libgmp-dev set to manually installed.
libglpk-dev is already the newest version (5.0-1).
libxml2-dev is already the newest version (2.9.13+dfsg-1ubuntu0.3).
The following packages were automatically installed and are no longer required:
libflashrom1 libftdi1-2 libllvm13 wmdocker
Use 'sudo apt autoremove' to remove them.
0 upgraded, 0 newly installed, 0 to remove and 9 not upgraded.