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Merged
gogonzo merged 29 commits into from
Dec 8, 2023
Merged

Remove old classes #196

gogonzo merged 29 commits into from
Dec 8, 2023

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@gogonzo
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@gogonzo gogonzo commented Nov 22, 2023

This is a feature branch, DON'T MERGE and DON'T COMMENT. PR open to have a constant checks. We will start review this PR as a whole in the sprint 4.

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github-actions bot commented Nov 22, 2023 •
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Code Coverage Summary

Filename                         Stmts    Miss  Cover    Missing
-----------------------------  -------  ------  -------  -------------------
R/cdisc_data.R                       1       1  0.00%    37
R/data_label.R                      24       5  79.17%   33-37, 72
R/datanames.R                       10       0  100.00%
R/default_cdisc_join_keys.R         11      11  0.00%    17-35
R/deprecated.R                      64      64  0.00%    16-338
R/dummy_function.R                   5       5  0.00%    16-23
R/formatters_var_labels.R           49      49  0.00%    28-151
R/join_key.R                        31       0  100.00%
R/join_keys-c.R                     26       0  100.00%
R/join_keys-extract.R              122       0  100.00%
R/join_keys-names.R                 15       0  100.00%
R/join_keys-parents.R               28       1  96.43%   28
R/join_keys-print.R                 46       0  100.00%
R/join_keys-utils.R                 87       2  97.70%   127, 130
R/join_keys.R                       21       0  100.00%
R/teal_data-class.R                 25       1  96.00%   70
R/teal_data-get_code.R              15       2  86.67%   55, 60
R/teal_data-show.R                   4       4  0.00%    13-18
R/teal_data.R                       22       9  59.09%   32, 41-47, 50
R/testhat-helpers.R                 26       0  100.00%
R/topological_sort.R                32       0  100.00%
R/utils-get_code_dependency.R       87       1  98.85%   41
R/utils.R                           14       0  100.00%
R/verify.R                          42      11  73.81%   68, 98-102, 105-109
R/zzz.R                             10      10  0.00%    4-16
TOTAL                              817     176  78.46%

Diff against main

Filename                         Stmts    Miss  Cover
-----------------------------  -------  ------  --------
R/cdisc_data.R                     -40       0  -97.56%
R/data_label.R                     -12      -8  +15.28%
R/datanames.R                       -1       0  +100.00%
R/default_cdisc_join_keys.R        +11     +11  +100.00%
R/deprecated.R                     +64     +64  +100.00%
R/dummy_function.R                   0      +4  -80.00%
R/formatters_var_labels.R            0     +28  -57.14%
R/join_key.R                        -1       0  +100.00%
R/join_keys-parents.R                0      +1  -3.57%
R/join_keys-print.R                 -1       0  +100.00%
R/join_keys-utils.R                  0      +1  -1.15%
R/join_keys.R                       -2       0  +100.00%
R/teal_data-class.R                 +2       0  +0.35%
R/teal_data-get_code.R             +15      +2  +86.67%
R/teal_data-show.R                  +4      +4  +100.00%
R/teal_data.R                      -17      +7  -35.78%
R/testhat-helpers.R                -27       0  +100.00%
R/utils-get_code_dependency.R      +87      +1  +98.85%
R/utils.R                          -42      -9  +16.07%
R/verify.R                         +42     +11  +73.81%
R/zzz.R                             -1      -1  +100.00%
TOTAL                              +81    +116  +1.22%

Results for commit: 9a84f1e

Minimum allowed coverage is 80%

♻️ This comment has been updated with latest results

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github-actions bot commented Nov 22, 2023 •
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Unit Tests Summary

    1 files    15 suites   1s ⏱️
170 tests 168 ✔️ 2 💤 0 ❌
252 runs  250 ✔️ 2 💤 0 ❌

Results for commit 9a84f1e.

♻️ This comment has been updated with latest results.

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Unit Test Performance Difference

Test suite performance difference
Test Suite $Status$ Time on main $±Time$ $±Tests$ $±Skipped$ $±Failures$ $±Errors$
CDISCTealDataConnector 💀 $0.18$ $-0.18$ $-21$ $0$ $0$ $0$
CDISCTealDataset 💀 $0.13$ $-0.13$ $-10$ $0$ $0$ $0$
CDISCTealDatasetConnector 💀 $0.04$ $-0.04$ $-7$ $0$ $0$ $0$
CallableCode 💀 $0.17$ $-0.17$ $-12$ $0$ $0$ $0$
CallableFunction 💀 $0.66$ $-0.66$ $-62$ $0$ $0$ $0$
CodeClass 💀 $0.14$ $-0.14$ $-27$ $0$ $0$ $0$
MAETealDataset 💀 $5.63$ $-5.63$ $-27$ $-1$ $0$ $0$
TealData 💀 $0.53$ $-0.53$ $-73$ $0$ $0$ $0$
TealDataAbstract 💀 $0.75$ $-0.75$ $-67$ $0$ $0$ $0$
TealDataConnection 💀 $0.09$ $-0.09$ $-16$ $0$ $0$ $0$
TealDataConnector 💀 $0.05$ $-0.05$ $-8$ $0$ $0$ $0$
TealDataset 💀 $1.06$ $-1.06$ $-124$ $0$ $0$ $0$
TealDatasetConnector 💀 $1.70$ $-1.70$ $-194$ $0$ $0$ $0$
TealDatasetConnector_constructors 💀 $0.01$ $-0.01$ $-1$ $0$ $0$ $0$
as_cdisc 💀 $0.03$ $-0.03$ $-8$ $0$ $0$ $0$
check_ellipsis 💀 $0.07$ $-0.07$ $-18$ $0$ $0$ $0$
code_dependency 💀 $0.28$ $-0.28$ $-33$ $0$ $0$ $0$
get_code_dataname 💀 $0.10$ $-0.10$ $-22$ $0$ $0$ $0$
get_join_keys 💀 $0.03$ $-0.03$ $-2$ $0$ $0$ $0$
get_raw_data 💀 $0.09$ $-0.09$ $-18$ $0$ $0$ $0$
is_pulled 💀 $0.03$ $-0.03$ $-4$ $0$ $0$ $0$
to_relational_data 💀 $0.21$ $-0.21$ $-42$ $0$ $0$ $0$
utils 💀 $0.10$ $-0.10$ $-19$ $0$ $0$ $0$
verify 👶 $+0.04$ $+8$ $0$ $0$ $0$
Additional test case details
Test Suite $Status$ Time on main $±Time$ Test Case
CDISCTealDataConnector 💀 $0.05$ $-0.05$ TealDataConnector_with_custom_UI_and_server
CDISCTealDataConnector 💀 $0.01$ $-0.01$ cdisc_data_connector_returns_a_CDISCTealDataConnector_object_on_basic_input
CDISCTealDataConnector 💀 $0.01$ $-0.01$ cdisc_data_connector_validates_the_connection_and_connectors_arguments
CDISCTealDataConnector 💀 $0.12$ $-0.12$ get_code_returns_the_correct_code_for_two_CDISCTealDatasetConnector_objects
CDISCTealDataset 💀 $0.02$ $-0.02$ CDISCTealDataset_basics
CDISCTealDataset 💀 $0.01$ $-0.01$ CDISCTealDataset_print_method_returns_correct_class_name_and_content
CDISCTealDataset 💀 $0.04$ $-0.04$ Case_1_CDISCTealDataset_get_code_does_not_return_duplicated_code_when_CDISCTealDataset_mutate_method_is_called
CDISCTealDataset 💀 $0.05$ $-0.05$ Case_2_CDISCTealDataset_get_code_does_not_return_duplicated_code_when_CDISCTealDataset_mutate_method_is_called
CDISCTealDataset 💀 $0.00$ $-0.00$ data_returns_the_data_passed_in_the_constructor
CDISCTealDataset 💀 $0.00$ $-0.00$ get_dataname_returns_the_dataname_passed_to_the_constructor
CDISCTealDatasetConnector 💀 $0.03$ $-0.03$ Single_dataset_connector
CDISCTealDatasetConnector 💀 $0.01$ $-0.01$ TealDatasetConnector_print_prints_out_expected_output_of_class_and_content
CallableCode 💀 $0.01$ $-0.01$ CallableCode_can_use_objects_from_namespaces_other_than_global
CallableCode 💀 $0.13$ $-0.13$ Objects_can_be_generated_from_the_code
CallableCode 💀 $0.02$ $-0.02$ callable_code_throws_an_error_when_supplied_code_is_not_valid
CallableCode 💀 $0.01$ $-0.01$ get_call_transforms_double_new_lines_into_one_new_line
CallableCode 💀 $0.01$ $-0.01$ run_throws_an_error_when_an_object_referenced_in_the_code_is_not_found
CallableFunction 💀 $0.00$ $-0.00$ CallableFunction_returns_the_correct_name_if_passed_a_Primitive_directly
CallableFunction 💀 $0.01$ $-0.01$ CallableFunction_returns_the_correct_name_if_passed_a_base_function_directly
CallableFunction 💀 $0.01$ $-0.01$ CallableFunction_returns_the_correct_name_if_passed_a_function_from_global_env_indirectly
CallableFunction 💀 $0.01$ $-0.01$ CallableFunction_returns_the_correct_name_if_passed_a_function_name_indirectly
CallableFunction 💀 $0.06$ $-0.06$ CallableFunction_returns_the_correct_name_if_passed_a_generic_from_a_namespace
CallableFunction 💀 $0.03$ $-0.03$ CallableFunction_returns_the_correct_name_if_passed_a_name_of_a_base_function
CallableFunction 💀 $0.01$ $-0.01$ CallableFunction_returns_the_correct_name_if_passed_a_namespace_function_indirectly
CallableFunction 💀 $0.00$ $-0.00$ CallableFunction_returns_the_correct_name_if_passed_a_prefixed_name_of_a_function
CallableFunction 💀 $0.00$ $-0.00$ CallableFunction_returns_the_correct_name_if_passed_an_anonymous_function
CallableFunction 💀 $0.01$ $-0.01$ CallableFunction_throws_an_error_if_passed_a_Primitive_by_character
CallableFunction 💀 $0.08$ $-0.08$ CallableFunction_throws_an_error_if_passed_a_namespace_function_via_a_binding_in_the_parent_frame
CallableFunction 💀 $0.01$ $-0.01$ CallableFunction_throws_an_error_if_passed_a_prefixed_object_not_a_function_
CallableFunction 💀 $0.06$ $-0.06$ Function_found
CallableFunction 💀 $0.04$ $-0.04$ Test_callable
CallableFunction 💀 $0.02$ $-0.02$ Test_inputs
CallableFunction 💀 $0.01$ $-0.01$ get_binding_name_throws_if_the_function_could_not_be_found_in_the_environment
CallableFunction 💀 $0.03$ $-0.03$ is_failed
CallableFunction 💀 $0.06$ $-0.06$ test_callable_errors
CallableFunction 💀 $0.21$ $-0.21$ test_cloning
CodeClass 💀 $0.01$ $-0.01$ Basic_example_CodeClass
CodeClass 💀 $0.01$ $-0.01$ CodeClass_append
CodeClass 💀 $0.01$ $-0.01$ CodeClass_append_deps
CodeClass 💀 $0.03$ $-0.03$ CodeClass_list_to_code_class
CodeClass 💀 $0.00$ $-0.00$ Duplicated_code_is_appended_if_it_doesn_t_have_a_dataname
CodeClass 💀 $0.00$ $-0.00$ Duplicated_code_is_appended_if_its_dataname_is_different
CodeClass 💀 $0.00$ $-0.00$ Duplicated_code_is_not_appended_if_its_dataname_is_duplicated
CodeClass 💀 $0.01$ $-0.01$ Exception_handling_with_dataname_of_xyz
CodeClass 💀 $0.00$ $-0.00$ example_datasets
CodeClass 💀 $0.02$ $-0.02$ example_datasets_deps
CodeClass 💀 $0.04$ $-0.04$ list_to_code_class_assigning_dataname_to_the_object_name_inside_of_the_list
MAETealDataset 💀 $0.08$ $-0.08$ Error_raised_executing_MAETealDataset_check_keys_and_duplicate_rows_found_in_key_columns
MAETealDataset 💀 $0.07$ $-0.07$ Error_raised_when_executing_MAETealDataset_check_and_code_is_empty
MAETealDataset 💀 $0.13$ $-0.13$ FALSE_returned_when_executing_MAETealDataset_check_and_code_is_not_correct
MAETealDataset 💀 $0.04$ $-0.04$ MAETealDataset_check_keys_doesn_t_throw_if_constructed_with_correct_keys
MAETealDataset 💀 $0.07$ $-0.07$ MAETealDataset_check_keys_throws_if_constructed_with_keys_not_present_in_colData
MAETealDataset 💀 $0.13$ $-0.13$ MAETealDataset_check_returns_TRUE_when_constructed_with_the_correct_code
MAETealDataset 💀 $4.52$ $-4.52$ MAETealDataset_constructors_do_not_raise_exceptions
MAETealDataset 💀 $0.10$ $-0.10$ MAETealDataset_getters_and_setters
MAETealDataset 💀 $0.04$ $-0.04$ MAETealDataset_is_pulled_returns_true
MAETealDataset 💀 $0.19$ $-0.19$ MAETealDataset_recreate_updates_the_class_fields
MAETealDataset 💀 $0.23$ $-0.23$ dataset_constructor_returns_the_same_as_MAETealDataset_new_
MAETealDataset 💀 $0.04$ $-0.04$ dataset_does_not_throw_when_passed_a_MultiAssayExperiment_object
TealData 💀 $0.07$ $-0.07$ Multiple_connectors
TealData 💀 $0.02$ $-0.02$ TealData_check_metadata_does_not_produce_error_if_join_keys_are_consistent_for_given_datasets
TealData 💀 $0.03$ $-0.03$ TealData_check_metadata_fails_if_inconsistent_join_keys_for_given_datasets
TealData 💀 $0.01$ $-0.01$ TealData_check_metadata_returns_error_when_a_column_in_the_keys_is_not_found
TealData 💀 $0.01$ $-0.01$ TealData_get_connectors_returns_a_list_with_the_numbers_of_connectors_provided
TealData 💀 $0.01$ $-0.01$ TealData_get_connectors_returns_an_empty_list_if_no_connectors_are_provided
TealData 💀 $0.00$ $-0.00$ TealData_get_items_returns_a_dataset_of_the_passed_dataset_name
TealData 💀 $0.00$ $-0.00$ TealData_get_items_returns_a_list_of_the_contents_if_no_dataname_is_defined
TealData 💀 $0.01$ $-0.01$ TealData_get_items_returns_the_content_of_the_passed_TealDataConnector_name
TealData 💀 $0.01$ $-0.01$ TealData_get_items_throws_an_error_if_the_desired_dataset_is_not_found
TealData 💀 $0.01$ $-0.01$ TealData_get_join_keys_returns_all_join_keys_of_the_single_dataname_specified
TealData 💀 $0.01$ $-0.01$ TealData_get_join_keys_returns_all_join_keys_when_no_input_datanme_is_specified
TealData 💀 $0.00$ $-0.00$ TealData_get_join_keys_returns_an_empty_joinKeys_if_no_join_keys_are_passed
TealData 💀 $0.01$ $-0.01$ TealData_get_join_keys_returns_the_join_keys_of_the_specified_datanames
TealData 💀 $0.00$ $-0.00$ TealData_get_parents_returns_an_empty_list_even_when_parents_are_specified
TealData 💀 $0.01$ $-0.01$ TealData_keeps_references_to_the_objects_passed_to_the_constructor
TealData 💀 $0.01$ $-0.01$ TealData_mutate_join_keys_changes_keys_for_both_datasets_same_key_in_both_
TealData 💀 $0.01$ $-0.01$ TealData_mutate_join_keys_returns_a_join_keys_object_with_the_updated_join_keys
TealData 💀 $0.01$ $-0.01$ TealData_new_sets_join_keys_datasets_based_on_the_passed_join_keys_input_otherwise_empty
TealData 💀 $0.02$ $-0.02$ TealData_new_sets_pull_and_mutate_code_as_empty_CodeClass
TealData 💀 $0.02$ $-0.02$ TealData_new_throws_if_data_is_not_valid
TealData 💀 $0.01$ $-0.01$ TealData_print_prints_out_expected_output_on_basic_input
TealData 💀 $0.13$ $-0.13$ TealData_with_mutliple_datasets_and_connectors
TealData 💀 $0.05$ $-0.05$ TealData_with_single_dataset_and_connector
TealData 💀 $0.03$ $-0.03$ copy_deep_TRUE_deep_copies_self_and_the_items
TealData 💀 $0.02$ $-0.02$ copy_deep_TRUE_keeps_valid_references_between_items
TealDataAbstract 💀 $0.01$ $-0.01$ TealDataAbstract_cannot_be_instantiated
TealDataAbstract 💀 $0.01$ $-0.01$ check_combined_code_returns_TRUE_when_the_code_is_reproducible
TealDataAbstract 💀 $0.01$ $-0.01$ check_combined_code_returns_error_when_the_code_is_not_reproducible
TealDataAbstract 💀 $0.01$ $-0.01$ check_combined_code_returns_error_when_the_code_is_not_supplied
TealDataAbstract 💀 $0.01$ $-0.01$ check_names_throws_if_passed_two_datasets_with_the_same_name
TealDataAbstract 💀 $0.02$ $-0.02$ check_reproducibility_passes_if_the_reproducibility_check_passes
TealDataAbstract 💀 $0.01$ $-0.01$ check_reproducibility_throws_error_if_reproducibility_check_does_not_pass
TealDataAbstract 💀 $0.01$ $-0.01$ check_returns_FALSE_if_the_code_provided_in_datasets_does_not_reproduce_them
TealDataAbstract 💀 $0.01$ $-0.01$ check_returns_NULL_if_the_check_parameter_is_false
TealDataAbstract 💀 $0.01$ $-0.01$ check_returns_TRUE_if_the_code_is_reproducible
TealDataAbstract 💀 $0.01$ $-0.01$ check_throws_an_error_when_one_of_the_passed_datasets_has_empty_code
TealDataAbstract 💀 $0.01$ $-0.01$ execute_mutate_returns_current_datasets_if_no_mutate_code
TealDataAbstract 💀 $0.02$ $-0.02$ execute_mutate_returns_updated_datasets
TealDataAbstract 💀 $0.02$ $-0.02$ get_check_result_method_returns_NULL_if_check_is_set_to_FALSE
TealDataAbstract 💀 $0.02$ $-0.02$ get_check_result_method_returns_TRUE_if_check_passed
TealDataAbstract 💀 $0.02$ $-0.02$ get_check_returns_the_check_status
TealDataAbstract 💀 $0.01$ $-0.01$ get_code_class_with_FALSE_returns_code_with_mutate_code
TealDataAbstract 💀 $0.01$ $-0.01$ get_code_class_with_TRUE_returns_code_without_mutate_code
TealDataAbstract 💀 $0.02$ $-0.02$ get_code_returns_the_code_of_the_dataset_specifed
TealDataAbstract 💀 $0.01$ $-0.01$ get_code_returns_the_code_of_the_datasets_when_no_input_is_specified
TealDataAbstract 💀 $0.01$ $-0.01$ get_code_returns_the_non_deparsed_code_when_deparse_is_set_to_FALSE
TealDataAbstract 💀 $0.02$ $-0.02$ get_code_throws_error_if_dataname_is_not_character_or_deparse_is_not_logical
TealDataAbstract 💀 $0.01$ $-0.01$ get_datanames_returns_a_vector_of_characters
TealDataAbstract 💀 $0.01$ $-0.01$ get_datanames_throws_error_if_an_argument_is_passed
TealDataAbstract 💀 $0.04$ $-0.04$ get_dataset_returns_a_list_of_all_datasets_if_passed_NULL
TealDataAbstract 💀 $0.02$ $-0.02$ get_dataset_returns_the_dataset_with_the_passed_name
TealDataAbstract 💀 $0.01$ $-0.01$ get_dataset_throws_an_error_if_no_dataset_is_found_with_the_passed_name
TealDataAbstract 💀 $0.01$ $-0.01$ get_dataset_throws_an_error_if_passed_name_is_not_character
TealDataAbstract 💀 $0.01$ $-0.01$ get_datasets_code_class_returns_a_CodeClass_object_with_the_code_passed
TealDataAbstract 💀 $0.01$ $-0.01$ get_datasets_code_class_returns_an_empty_CodeClass_object_when_no_code_is_passed
TealDataAbstract 💀 $0.03$ $-0.03$ get_datasets_returns_a_list_of_all_datasets_if_passed_NULL
TealDataAbstract 💀 $0.01$ $-0.01$ get_datasets_throws_an_error_is_a_dataset_is_not_pulled_yet
TealDataAbstract 💀 $0.06$ $-0.06$ get_items_returns_all_items_in_TealDataAbstract_object_when_no_input_dataname_is_specified
TealDataAbstract 💀 $0.02$ $-0.02$ get_items_returns_the_item_of_the_specified_input_dataname
TealDataAbstract 💀 $0.01$ $-0.01$ get_items_throws_error_if_dataname_is_not_found
TealDataAbstract 💀 $0.01$ $-0.01$ get_pull_code_class_gets_code_correctly
TealDataAbstract 💀 $0.01$ $-0.01$ is_pulled_returns_if_the_datasets_are_pulled
TealDataAbstract 💀 $0.01$ $-0.01$ mutate_dataset_throws_an_error_if_the_dataname_is_not_character
TealDataAbstract 💀 $0.01$ $-0.01$ mutate_dataset_throws_an_error_if_the_dataname_is_not_found
TealDataAbstract 💀 $0.01$ $-0.01$ mutate_dataset_updates_the_code_of_the_dataset
TealDataAbstract 💀 $0.01$ $-0.01$ mutate_updates_the_code
TealDataAbstract 💀 $0.02$ $-0.02$ reassign_datasets_vars_updates_the_references_of_vars_in_items_according_to_items_addresses
TealDataAbstract 💀 $0.01$ $-0.01$ set_check_accepts_only_logical_input
TealDataAbstract 💀 $0.01$ $-0.01$ set_check_sets_the_reproducibility_check
TealDataAbstract 💀 $0.02$ $-0.02$ set_mutate_code_accepts_character_code_of_length_1
TealDataAbstract 💀 $0.01$ $-0.01$ set_mutate_code_updates_the_object_code
TealDataAbstract 💀 $0.02$ $-0.02$ set_mutate_vars_accepts_a_unique_names_list_throws_error_otherwise
TealDataAbstract 💀 $0.01$ $-0.01$ set_mutate_vars_appends_the_new_mutate_vars
TealDataAbstract 💀 $0.01$ $-0.01$ set_pull_code_sets_code_correctly
TealDataAbstract 💀 $0.01$ $-0.01$ set_pull_code_throws_error_if_TealDataAbstract_has_only_connectors
TealDataAbstract 💀 $0.01$ $-0.01$ set_pull_code_throws_error_if_code_is_not_character
TealDataAbstract 💀 $0.01$ $-0.01$ set_pull_code_throws_error_if_code_is_specified_on_data_and_dataset_levels
TealDataConnection 💀 $0.01$ $-0.01$ TealDataConnection_can_be_initialized
TealDataConnection 💀 $0.00$ $-0.00$ TealDataConnection_set_close_server_accepts_the_new_Shiny_module_definition
TealDataConnection 💀 $0.00$ $-0.00$ TealDataConnection_set_close_server_accepts_the_old_Shiny_module_definition
TealDataConnection 💀 $0.00$ $-0.00$ TealDataConnection_set_open_server_accepts_the_new_Shiny_module_definition
TealDataConnection 💀 $0.00$ $-0.00$ TealDataConnection_set_open_server_accepts_the_old_Shiny_module_definition
TealDataConnection 💀 $0.00$ $-0.00$ TealDataConnection_set_preopen_server_accepts_the_new_Shiny_module_definition
TealDataConnection 💀 $0.00$ $-0.00$ TealDataConnection_set_preopen_server_accepts_the_old_Shiny_module_definition
TealDataConnection 💀 $0.04$ $-0.04$ data_connection
TealDataConnection 💀 $0.01$ $-0.01$ data_connection_returns_a_TealDataConnection_object_on_basic_input
TealDataConnector 💀 $0.00$ $-0.00$ TealDataConnector_print_prints_out_expected_output_on_basic_input
TealDataConnector 💀 $0.03$ $-0.03$ TealDataConnector_with_TealDataConnection
TealDataConnector 💀 $0.01$ $-0.01$ relational_data_connector_has_input_validation
TealDataConnector 💀 $0.01$ $-0.01$ relational_data_connector_returns_a_TealDataConnector_object_on_basic_input
TealDataset 💀 $0.01$ $-0.01$ Dupliated_mutation_code_is_shown_via_get_code_
TealDataset 💀 $0.02$ $-0.02$ TealDataset_active_bindings_and_getters
TealDataset 💀 $0.03$ $-0.03$ TealDataset_basics
TealDataset 💀 $0.04$ $-0.04$ TealDataset_check_method
TealDataset 💀 $0.01$ $-0.01$ TealDataset_check_returns_FALSE_if_the_passed_code_creates_a_binding_with_a_different_object
TealDataset 💀 $0.01$ $-0.01$ TealDataset_get___colnames
TealDataset 💀 $0.00$ $-0.00$ TealDataset_get_rownames
TealDataset 💀 $0.01$ $-0.01$ TealDataset_is_mutate_delayed_returns_TRUE_if_the_TealDataset_s_dependency_is_delayed
TealDataset 💀 $0.02$ $-0.02$ TealDataset_is_mutate_delayed_stays_FALSE_if_the_TealDataset_s_dependency_turns_from_not_delayed_to_delayed
TealDataset 💀 $0.11$ $-0.11$ TealDataset_mutate_method_with_delayed_logic
TealDataset 💀 $0.00$ $-0.00$ TealDataset_recreate
TealDataset 💀 $0.01$ $-0.01$ TealDataset_recreate_does_not_reset_the_mutation_code
TealDataset 💀 $0.01$ $-0.01$ TealDataset_recreate_does_not_reset_the_variables_needed_for_mutation
TealDataset 💀 $0.03$ $-0.03$ TealDataset_set_vars_throws_an_error_if_passed_the_enclosing_TealDatasetConnector
TealDataset 💀 $0.01$ $-0.01$ TealDataset_set_vars_throws_an_error_if_passed_the_enclosing_TealDataset_object_directly
TealDataset 💀 $0.01$ $-0.01$ TealDataset_set_vars_throws_an_error_if_passed_the_enclosing_TealDataset_object_indirectly_distance_1
TealDataset 💀 $0.01$ $-0.01$ TealDataset_set_vars_throws_an_error_if_passed_the_enclosing_TealDataset_object_indirectly_distance_2
TealDataset 💀 $0.01$ $-0.01$ TealDataset_supplementary_constructors
TealDataset 💀 $0.01$ $-0.01$ clone_deep_TRUE_deep_clones_dependencies_which_are_TealDataset_objects
TealDataset 💀 $0.01$ $-0.01$ dataset_print_prints_out_all_rows_when_less_than_6
TealDataset 💀 $0.00$ $-0.00$ dataset_print_truncates_output_after_6_rows
TealDataset 💀 $0.01$ $-0.01$ dataset_print_warns_of_superfluous_arguments
TealDataset 💀 $0.01$ $-0.01$ get_code_class_returns_the_correct_CodeClass_after_mutating_with_another_TealDataset
TealDataset 💀 $0.01$ $-0.01$ get_code_class_returns_the_correct_CodeClass_object
TealDataset 💀 $0.00$ $-0.00$ get_var_r6_returns_identical_R6_objects_as_passed_with_set_vars
TealDataset 💀 $0.02$ $-0.02$ metadata_can_be_NULL_the_default_
TealDataset 💀 $0.01$ $-0.01$ metadata_not_a_list_of_length_one_atomics_throws_an_error
TealDataset 💀 $0.01$ $-0.01$ metadata_not_a_list_throws_an_error
TealDataset 💀 $0.08$ $-0.08$ mutate_dataset
TealDataset 💀 $0.05$ $-0.05$ mutate_dataset_with_vars_argument
TealDataset 💀 $0.01$ $-0.01$ reassign_datasets_vars_does_not_change_any_vars_while_empty_list_is_provided
TealDataset 💀 $0.49$ $-0.49$ reassign_datasets_vars_does_not_change_vars_elements_of_class_different_than_TealDataset_and_TealDatasetConnector
TealDataset 💀 $0.01$ $-0.01$ reassign_datasets_vars_updates_the_references_of_the_vars_r6_to_addresses_of_passed_objects
TealDataset 💀 $0.01$ $-0.01$ reassign_datasets_vars_updates_the_references_of_the_vars_to_addresses_of_passed_objects
TealDatasetConnector 💀 $0.01$ $-0.01$ Callable_metadata_is_pulled_when_data_is_pulled
TealDatasetConnector 💀 $0.01$ $-0.01$ Identical_mutation_expressions_are_added_to_the_mutation_code
TealDatasetConnector 💀 $0.01$ $-0.01$ Identical_mutation_expressions_are_executed_upon_pulling_the_Connector_object
TealDatasetConnector 💀 $0.01$ $-0.01$ Identical_mutation_expressions_are_shown_in_the_returned_code_after_pulling
TealDatasetConnector 💀 $0.05$ $-0.05$ Initializing_TealDatasetConnector_with_code_argument_works
TealDatasetConnector 💀 $0.01$ $-0.01$ Pulled_TealDatasetConnector_returns_the_same_CodeClass_as_before_pulling
TealDatasetConnector 💀 $0.01$ $-0.01$ Pulled_dependent_TealDatasetConnector_returns_the_same_CodeClass_as_before_pulling
TealDatasetConnector 💀 $0.01$ $-0.01$ Pulling_an_already_pulled_TealDatasetConnector_after_mutating_it_with_a_delayed_object_does_not_change_the_returned_code
TealDatasetConnector 💀 $0.01$ $-0.01$ Pulling_an_already_pulled_TealDatasetConnector_after_mutating_it_with_a_delayed_object_undoes_any_eager_pre_pull_mutations
TealDatasetConnector 💀 $0.02$ $-0.02$ Pulling_twice_doesn_t_change_the_returned_TealDatasetConnector_s_CodeClass_
TealDatasetConnector 💀 $0.07$ $-0.07$ TealDatasetConnector
TealDatasetConnector 💀 $0.01$ $-0.01$ TealDatasetConnector_is_mutate_delayed_is_FALSE_if_not_yet_pulled_and_not_mutated
TealDatasetConnector 💀 $0.01$ $-0.01$ TealDatasetConnector_is_mutate_delayed_returns_FALSE_if_mutated_with_no_vars_after_pulling
TealDatasetConnector 💀 $0.01$ $-0.01$ TealDatasetConnector_is_mutate_delayed_returns_FALSE_if_pulled_and_not_mutated
TealDatasetConnector 💀 $0.01$ $-0.01$ TealDatasetConnector_is_mutate_delayed_returns_TRUE_if_mutated_with_no_delayed_objects_and_pulled
TealDatasetConnector 💀 $0.01$ $-0.01$ TealDatasetConnector_is_mutate_delayed_returns_TRUE_if_not_pulled_and_mutated
TealDatasetConnector 💀 $0.02$ $-0.02$ TealDatasetConnector_mutate_method_edge_cases
TealDatasetConnector 💀 $0.22$ $-0.22$ TealDatasetConnector_mutate_method_with_delayed_logic
TealDatasetConnector 💀 $0.01$ $-0.01$ TealDatasetConnector_print_does_not_print_dataset_when_not_yet_pulled
TealDatasetConnector 💀 $0.01$ $-0.01$ TealDatasetConnector_print_prints_dataset_when_it_is_pulled
TealDatasetConnector 💀 $0.01$ $-0.01$ TealDatasetConnector_returns_the_correct_code_when_mutated_with_no_vars_after_pulling
TealDatasetConnector 💀 $0.02$ $-0.02$ clone_deep_TRUE_deep_clones_dependencies_which_are_TealDataset_objects
TealDatasetConnector 💀 $0.04$ $-0.04$ code_dataset_connector_Modify_vars
TealDatasetConnector 💀 $0.02$ $-0.02$ code_dataset_connector_Test_various_inputs
TealDatasetConnector 💀 $0.04$ $-0.04$ code_dataset_connector_library_calls
TealDatasetConnector 💀 $0.15$ $-0.15$ csv_cdisc_dataset_connector
TealDatasetConnector 💀 $0.41$ $-0.41$ csv_dataset_connector
TealDatasetConnector 💀 $0.05$ $-0.05$ csv_dataset_connector_attritubes
TealDatasetConnector 💀 $0.12$ $-0.12$ csv_dataset_connector_non_standard_datasets_multi_space_character_delim
TealDatasetConnector 💀 $0.05$ $-0.05$ csv_dataset_connector_not_expected_input
TealDatasetConnector 💀 $0.04$ $-0.04$ fun_cdisc_dataset_connector
TealDatasetConnector 💀 $0.01$ $-0.01$ get_code_class_returns_the_correct_CodeClass_object
TealDatasetConnector 💀 $0.01$ $-0.01$ get_var_r6_returns_identical_objects_as_these_passed_to_the_vars_argument_in_the_constructor
TealDatasetConnector 💀 $0.02$ $-0.02$ if_pulled_metadata_is_invalid_dataset_is_still_created_but_metadata_is_NULL
TealDatasetConnector 💀 $0.02$ $-0.02$ if_pulling_metadata_fails_dataset_is_still_created_but_metadata_is_NULL
TealDatasetConnector 💀 $0.01$ $-0.01$ list_metadata_is_passed_to_dataset_when_data_is_pulled
TealDatasetConnector 💀 $0.01$ $-0.01$ metadata_for_TealDatasetConnector_can_be_Callable_list_or_NULL
TealDatasetConnector 💀 $0.04$ $-0.04$ rds_dataset_connector
TealDatasetConnector 💀 $0.01$ $-0.01$ reassign_datasets_vars_does_not_change_any_vars_while_empty_list_is_provided
TealDatasetConnector 💀 $0.01$ $-0.01$ reassign_datasets_vars_does_not_change_vars_elements_of_class_different_than_TealDataset_and_TealDatasetConnector
TealDatasetConnector 💀 $0.02$ $-0.02$ reassign_datasets_vars_updates_the_references_of_the_vars_r6_to_addresses_of_passed_objects
TealDatasetConnector 💀 $0.02$ $-0.02$ reassign_datasets_vars_updates_the_references_of_the_vars_to_addresses_of_passed_objects
TealDatasetConnector 💀 $0.02$ $-0.02$ script_cdisc_dataset_connector
TealDatasetConnector 💀 $0.02$ $-0.02$ script_dataset_connector
TealDatasetConnector_constructors 💀 $0.01$ $-0.01$ code_dataset_connector_returns_the_same_object_as_TealDatasetConnector
as_cdisc 💀 $0.01$ $-0.01$ as_cdisc_assigns_cdisc_keys_if_dataset_has_no_keys_and_name_matches_cdisc
as_cdisc 💀 $0.01$ $-0.01$ as_cdisc_does_not_assign_cdisc_keys_if_dataset_has_no_keys_but_name_does_not_match_cdisc
as_cdisc 💀 $0.01$ $-0.01$ as_cdisc_does_not_modify_a_cdisc_flavoured_object
as_cdisc 💀 $0.00$ $-0.00$ as_cdisc_passes_keys_from_dataset_to_cdisc_dataset
as_cdisc 💀 $0.01$ $-0.01$ as_cdisc_passes_metadata_from_dataset_to_cdisc_dataset
cdisc_data 💀 $0.06$ $-0.06$ Basic_example_check_overall_code
cdisc_data 💀 $0.02$ $-0.02$ Basic_example_without_code_and_check
cdisc_data 💀 $0.15$ $-0.15$ List_values
cdisc_data 💀 $0.04$ $-0.04$ cdisc_data_accepts_TealDataset_TealDatasetConnector_TealDataConnector_objects
cdisc_data 💀 $0.01$ $-0.01$ cdisc_data_file_loads_the_TealData_object
cdisc_data 💀 $0.01$ $-0.01$ cdisc_data_file_uses_the_code_input_to_mutate_the_code_of_the_loaded_TealData_object
cdisc_data 💀 $0.01$ $-0.01$ cdisc_data_sets_primary_keys_as_join_keys_when_no_join_keys_are_present
cdisc_data 💀 $0.03$ $-0.03$ cdisc_data_sets_the_join_keys_internally
cdisc_data 💀 $0.03$ $-0.03$ cdisc_data_sets_the_join_keys_internally_based_on_parents_relations_when_primary_keys_are_altered
cdisc_data 💀 $0.01$ $-0.01$ cdisc_data_throws_error_when_a_parent_child_graph_is_not_correct
check_ellipsis 💀 $0.03$ $-0.03$ check_ellipsis_with_allowed_args
check_ellipsis 💀 $0.02$ $-0.02$ check_ellipsis_with_extra_named_and_unamed_arguments
check_ellipsis 💀 $0.01$ $-0.01$ check_ellipsis_with_extra_named_and_unamed_arguments_in_wrong_order
check_ellipsis 💀 $0.01$ $-0.01$ check_ellipsis_with_extra_named_arguments
check_ellipsis 💀 $0.01$ $-0.01$ check_ellipsis_with_extra_unamed_arguments
check_ellipsis 💀 $0.01$ $-0.01$ check_ellipsis_with_no_unused
code_dependency 💀 $0.01$ $-0.01$ Can_t_detect_occurrence_of_function_definition_when_a_formal_is_named_the_same_as_a_function
code_dependency 💀 $0.01$ $-0.01$ _linksto_cause_to_return_this_line_for_affected_binding
code_dependency 💀 $0.01$ $-0.01$ _linksto_gets_extracted_if_it_s_a_side_effect_on_a_dependent_object
code_dependency 💀 $0.02$ $-0.02$ _linksto_gets_extracted_if_it_s_a_side_effect_on_a_dependent_object_of_a_dependent_object
code_dependency 💀 $0.01$ $-0.01$ _linksto_returns_this_line_for_affected_binding_even_if_object_is_not_specificed_created_in_the_same_eval_code
code_dependency 💀 $0.01$ $-0.01$ _linksto_returns_this_line_for_affected_binding_if_object_is_not_specificed_in_the_same_element_of_code
code_dependency 💀 $0.01$ $-0.01$ _linksto_tag_indicate_affected_object_if_object_is_assigned_anywhere_in_a_code
code_dependency 💀 $0.01$ $-0.01$ get_code_dependency_can_extract_the_code_when_function_creates_an_object_which_is_used_only_on_rhs
code_dependency 💀 $0.01$ $-0.01$ get_code_dependency_can_extract_the_code_when_using_
code_dependency 💀 $0.01$ $-0.01$ get_code_dependency_can_t_extract_the_code_when_no_assign_operator
code_dependency 💀 $0.01$ $-0.01$ get_code_dependency_detects_cooccurrence_properly_even_if_all_objects_are_on_rhs
code_dependency 💀 $0.01$ $-0.01$ get_code_dependency_detects_every_assign_calls_even_if_not_evaluated
code_dependency 💀 $0.01$ $-0.01$ get_code_dependency_detects_occurrence_of_the_function_object
code_dependency 💀 $0.01$ $-0.01$ get_code_dependency_does_not_brake_for_empty_input
code_dependency 💀 $0.01$ $-0.01$ get_code_dependency_extract_code_of_a_binding_from_a_simple_code_put_in_a_character
code_dependency 💀 $0.01$ $-0.01$ get_code_dependency_extracts_code_of_a_parent_binding_but_only_those_evaluated_before_coocurence
code_dependency 💀 $0.01$ $-0.01$ get_code_dependency_extracts_code_of_a_parent_binding_if_used_as_an_arg_in_fun_call
code_dependency 💀 $0.01$ $-0.01$ get_code_dependency_ignores_effect_of_the_object_which_occurs_in_a_function_definition
code_dependency 💀 $0.01$ $-0.01$ get_code_dependency_ignores_occurrence_in_function_definition
code_dependency 💀 $0.01$ $-0.01$ get_code_dependency_ignores_occurrence_in_function_definition_without_curly_brackets
code_dependency 💀 $0.01$ $-0.01$ get_code_dependency_is_possible_to_output_the_code_for_multiple_objects
code_dependency 💀 $0.06$ $-0.06$ get_code_dependency_understands_usage_and_do_not_treat_rhs_of_as_objects_only_lhs_
code_dependency 💀 $0.01$ $-0.01$ get_code_dependency_warns_if_binding_doesn_t_exist_in_a_code
code_dependency 💀 $0.01$ $-0.01$ lines_affecting_parent_evaluated_after_co_occurrence_are_not_included_in_get_code_dependency_output
code_dependency 💀 $0.01$ $-0.01$ lines_affecting_parent_evaluated_after_co_occurrence_are_not_included_in_get_code_dependency_output_when_using_linksto
data_label 💀 $0.08$ $-0.08$ get_cdisc_keys_returns_column_names_present_in_the_cached_datasets
get_code 👶 $+0.01$ Can_t_detect_occurrence_of_function_definition_when_a_formal_is_named_the_same_as_a_function
get_code 💀 $0.00$ $-0.00$ Excludes_commented_keep_quoted_comments
get_code 💀 $0.01$ $-0.01$ Excludes_nocode_sigle_and_multi_line
get_code 💀 $0.01$ $-0.01$ Include_sourced_code
get_code 💀 $0.00$ $-0.00$ Reads_code_from_starts_at_to_stops_at
get_code 👶 $+0.01$ _linksto_cause_to_return_this_line_for_affected_binding
get_code 👶 $+0.01$ _linksto_gets_extracted_if_it_s_a_side_effect_on_a_dependent_object
get_code 👶 $+0.01$ _linksto_gets_extracted_if_it_s_a_side_effect_on_a_dependent_object_of_a_dependent_object
get_code 👶 $+0.01$ _linksto_returns_this_line_for_affected_binding_even_if_object_is_not_specificed_created_in_the_same_eval_code
get_code 👶 $+0.01$ _linksto_returns_this_line_for_affected_binding_if_object_is_not_specificed_in_the_same_element_of_code
get_code 👶 $+0.03$ _linksto_tag_indicate_affected_object_if_object_is_assigned_anywhere_in_a_code
get_code 💀 $0.02$ $-0.02$ arguments_properly_specified
get_code 💀 $0.04$ $-0.04$ get_code.TealDataAbstract_returns_identical_code_to_TealDataAbstract_get_code
get_code 💀 $0.02$ $-0.02$ get_code.TealDatasetConnector_returns_identical_code_to_TealDatasetConnector_get_code
get_code 💀 $0.01$ $-0.01$ get_code.TealDataset_returns_identical_code_to_TealDataset_get_code
get_code 👶 $+0.02$ get_code_with_datanames_can_extract_the_code_when_function_creates_an_object_which_is_used_only_on_rhs
get_code 👶 $+0.01$ get_code_with_datanames_can_extract_the_code_when_using_
get_code 👶 $+0.00$ get_code_with_datanames_can_t_extract_the_code_for_assign_function
get_code 👶 $+0.01$ get_code_with_datanames_detects_cooccurrence_properly_even_if_all_objects_are_on_rhs
get_code 👶 $+0.01$ get_code_with_datanames_detects_every_assign_calls_even_if_not_evaluated
get_code 👶 $+0.01$ get_code_with_datanames_detects_occurrence_of_the_function_object
get_code 👶 $+0.02$ get_code_with_datanames_does_not_fall_into_a_loop
get_code 👶 $+0.00$ get_code_with_datanames_does_not_ignore_occurrence_in_function_body_if_object_exsits_in_env
get_code 👶 $+0.01$ get_code_with_datanames_extracts_code_of_a_binding_from_character_vector_containing_simple_code
get_code 👶 $+0.01$ get_code_with_datanames_extracts_code_of_a_parent_binding_but_only_those_evaluated_before_coocurence
get_code 👶 $+0.01$ get_code_with_datanames_extracts_code_of_a_parent_binding_if_used_as_an_arg_in_fun_call
get_code 👶 $+0.01$ get_code_with_datanames_handles_code_without_symbols_in_RHS
get_code 👶 $+0.04$ get_code_with_datanames_handles_empty_code_slot
get_code 👶 $+0.02$ get_code_with_datanames_ignores_occurrence_in_function_definition
get_code 👶 $+0.02$ get_code_with_datanames_ignores_occurrence_in_function_definition_in_lapply
get_code 👶 $+0.04$ get_code_with_datanames_ignores_occurrence_in_function_definition_without_curly_brackets
get_code 👶 $+0.01$ get_code_with_datanames_is_possible_to_output_the_code_for_multiple_objects
get_code 👶 $+0.01$ get_code_with_datanames_returns_custom_function_calls_on_object
get_code 👶 $+0.07$ get_code_with_datanames_understands_usage_and_do_not_treat_rhs_of_as_objects_only_lhs_
get_code 👶 $+0.01$ get_code_with_datanames_warns_if_binding_doesn_t_exist_in_code
get_code 👶 $+0.01$ get_code_works_for_datanames_of_length_1
get_code 👶 $+0.01$ lines_affecting_parent_evaluated_after_co_occurrence_are_not_included_in_get_code_with_datanamesoutput
get_code 👶 $+0.02$ lines_affecting_parent_evaluated_after_co_occurrence_are_not_included_in_get_code_with_datanamesoutput_when_using_linksto
get_code_dataname 💀 $0.01$ $-0.01$ Excludes_commented_keep_quoted_comments
get_code_dataname 💀 $0.02$ $-0.02$ Excludes_nocode_sigle_and_multi_line
get_code_dataname 💀 $0.01$ $-0.01$ Include_sourced_code
get_code_dataname 💀 $0.01$ $-0.01$ NULL_empty
get_code_dataname 💀 $0.00$ $-0.00$ Reads_code_from_starts_at_to_stops_at
get_code_dataname 💀 $0.02$ $-0.02$ arguments_properly_specified
get_code_dataname 💀 $0.03$ $-0.03$ union_diff
get_join_keys 💀 $0.03$ $-0.03$ get_join_keys_is_deprecated
get_raw_data 💀 $0.02$ $-0.02$ get_raw_data.TealDataAbstract_returns_dataset_objects_verbatim_when_input_is_TealData
get_raw_data 💀 $0.04$ $-0.04$ get_raw_data.TealDataAbstract_returns_dataset_objects_verbatim_when_input_is_TealDataConnector_or_CDISCTealData
get_raw_data 💀 $0.01$ $-0.01$ get_raw_data.TealDatasetConnector_gives_warning_when_dataname_is_supplied_
get_raw_data 💀 $0.00$ $-0.00$ get_raw_data.TealDatasetConnector_returns_a_SCDA_data_frame_verbatim_
get_raw_data 💀 $0.00$ $-0.00$ get_raw_data.TealDataset_gives_warning_when_dataname_is_supplied_
get_raw_data 💀 $0.00$ $-0.00$ get_raw_data.TealDataset_returns_a_data.frame_verbatim_
get_raw_data 💀 $0.01$ $-0.01$ get_raw_data_validates_the_argument_dataname
is_pulled 💀 $0.01$ $-0.01$ Test_TealDataConnector_is_pulled
is_pulled 💀 $0.01$ $-0.01$ Test_TealDatasetConnector_is_pulled
is_pulled 💀 $0.01$ $-0.01$ Test_TealDataset_is_pulled
teal_data 💀 $0.01$ $-0.01$ empty_teal_data_returns_empty_code_id_wartnings_and_messages
teal_data 👶 $+0.01$ empty_teal_data_returns_empty_code_id_wartnings_and_messages_and_verified_TRUE
teal_data 👶 $+0.00$ non_empty_data_in_teal_data_returns_verified_FALSE
teal_data 💀 $0.02$ $-0.02$ teal_data_accepts_TealDataset_TealDatasetConnector_TealDataConnector_objects
teal_data 💀 $0.01$ $-0.01$ teal_data_file_loads_the_TealData_object
teal_data 💀 $0.01$ $-0.01$ teal_data_file_uses_the_code_input_to_mutate_the_code_of_the_loaded_TealData_object
teal_data 💀 $0.03$ $-0.03$ teal_data_returns_TealData_object_with_cdisc_dataset_input
teal_data 💀 $0.01$ $-0.01$ teal_data_sets_passed_join_keys_to_datasets_correctly
teal_data 💀 $0.01$ $-0.01$ teal_data_sets_passed_join_keys_to_datasets_correctly_when_key_names_differ
teal_data 💀 $0.01$ $-0.01$ teal_data_sets_passes_join_keys_to_datasets_correctly_when_key_names_differ_multiple_keys_
teal_data 💀 $0.01$ $-0.01$ update_join_keys_to_primary_updates_join_keys_with_character_0_when_no_primary_keys_exist
teal_data 💀 $0.01$ $-0.01$ update_join_keys_to_primary_updates_the_join_keys
teal_data 💀 $0.01$ $-0.01$ update_join_keys_to_primary_updates_the_join_keys_when_primary_keys_exist
to_relational_data 💀 $0.01$ $-0.01$ to_relational_data_accepts_TealDatasetConnector_as_input
to_relational_data 💀 $0.01$ $-0.01$ to_relational_data_accepts_TealDataset_CDISCTealDataset_as_input
to_relational_data 💀 $0.04$ $-0.04$ to_relational_data_accepts_a_MultiAssayExperiment_as_input
to_relational_data 💀 $0.01$ $-0.01$ to_relational_data_accepts_a_complete_named_list_of_data.frame_as_input
to_relational_data 💀 $0.01$ $-0.01$ to_relational_data_accepts_a_function_returning_a_TealDataset_as_input
to_relational_data 💀 $0.01$ $-0.01$ to_relational_data_accepts_a_function_returning_a_named_list_as_input
to_relational_data 💀 $0.04$ $-0.04$ to_relational_data_accepts_a_list_containing_a_named_MultiAssayExperiment_as_input
to_relational_data 💀 $0.01$ $-0.01$ to_relational_data_accepts_a_mixed_named_list_of_data.frame_as_input
to_relational_data 💀 $0.02$ $-0.02$ to_relational_data_accepts_a_mixed_named_list_of_objects_as_input
to_relational_data 💀 $0.01$ $-0.01$ to_relational_data_accepts_a_named_list_of_data.frame_as_input
to_relational_data 💀 $0.01$ $-0.01$ to_relational_data_accepts_an_unnamed_list_of_data.frame_as_input
to_relational_data 💀 $0.01$ $-0.01$ to_relational_data_accepts_cdisc_data.frame_as_input
to_relational_data 💀 $0.01$ $-0.01$ to_relational_data_accepts_data.frame_as_input
to_relational_data 💀 $0.01$ $-0.01$ to_relational_data_throws_error_with_a_function_returning_a_non_named_list
to_relational_data 💀 $0.01$ $-0.01$ to_relational_data_throws_error_with_a_function_returning_a_semi_named_list
to_relational_data 💀 $0.01$ $-0.01$ to_relational_data_throws_error_with_a_multiple_functions_returning_data.frame
utils 💀 $0.01$ $-0.01$ check_pkg_quietly_works
utils 💀 $0.03$ $-0.03$ get_key_duplicates_util_function
utils 💀 $0.03$ $-0.03$ get_teal_bs_theme
utils 💀 $0.01$ $-0.01$ validate_metadata_throws_error_if_metadata_is_not_a_list_of_length_one_atomics_or_NULL_
utils 💀 $0.01$ $-0.01$ validate_metadata_throws_error_if_metadata_is_not_a_list_or_NULL_
utils 💀 $0.01$ $-0.01$ validate_metadata_throws_error_if_metadata_is_not_a_named_list_or_NULL_
utils 💀 $0.00$ $-0.00$ validate_metadata_throws_no_error_if_metadata_is_NULL
verify 👶 $+0.01$ verify_raises_error_if_code_does_not_restore_objects_in_env
verify 👶 $+0.01$ verify_returns_error_for_qenv.error_input
verify 👶 $+0.01$ verify_returns_the_same_object_for_verified_TRUE
verify 👶 $+0.01$ verify_returns_the_same_object_with_changed_verified_field_for_properly_executed_code

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chlebowa
chlebowa reviewed Nov 22, 2023
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Aleksander Chlebowski and others added 8 commits November 22, 2023 15:43
remove %||% import
9743520
remove setNames import
33eb2c9
update reproducibity vignette
b8c7551
@m7pr @dependabot-preview
@chlebowa @github-actions @averissimo @pawelru @gogonzo
182 introduce @verified slot in teal_data class (#188)
7ff745c 
Close #182 

### Feature description
- Added `@verified` slot to `teal_data` class. 
- When object is initialized with empty `data` and `code` then
`verified` is equal to `TRUE`.
- If `data` or `code` are not-empty then `verified` is set to `FALSE`.
- Introduced `verify` 
    - S4 generic for `teal_data` and `qenv.error` classes.
    - Checks if you can reproduce `teal_data@env` with `teal_data@code`.
    - Sets `teal_data@verified` to TRUE if you can. 
    - Throws an error other way.  
- For `qenv.error` throwns an error with `object@message` information.
- Introduced `get_code` S4 generic for `teal_data` object
- `datanames` parameter allows to use `get_code_dependency(code, names)`
to get the code for specific objects.
- `get_code_dependency` was moved from `teal.code`
#194
- Introduced `show,teal_data-method`
    - adds message to the print for 
        - `teal_data@verified = FALSE` saying object **is not** verified
        - `teal_data@verified = TRUE` saying object **is** verified


### Not included
I did not provide a mechanism to block manual change of `@valid` slot,
as we do not have this for `@code` / `@env` anyway.

#### TODO
- [x] add `get_code.teal_data()` S3 method
- [x] rewrite `is_reproducible` to `S4 generic with method for teal_data
and for qenv.error.`
- [x] keep looking for a better name than `is_reproducible`
#189
- [x] write `teal.data::get_code` S4 for `teal_data` object
- [x] bring `get_code_dependency` from `teal.code` to `teal.data`
#194
- [x] improve and simplify error statements
#188 (comment)
- [ ] fix documentation suggestions
- [x] extend warnings for 3 scenarios of difference between code results
and objects in `@env`

---------

Signed-off-by: Marcin <133694481+m7pr@users.noreply.github.com>
Signed-off-by: Pawel Rucki <12943682+pawelru@users.noreply.github.com>
Signed-off-by: Aleksander Chlebowski <114988527+chlebowa@users.noreply.github.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>
Co-authored-by: Aleksander Chlebowski <114988527+chlebowa@users.noreply.github.com>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Aleksander Chlebowski <aleksander.chlebowski@contractors.roche.com>
Co-authored-by: André Veríssimo <211358+averissimo@users.noreply.github.com>
Co-authored-by: Pawel Rucki <12943682+pawelru@users.noreply.github.com>
Co-authored-by: pawelru <pawelru@users.noreply.github.com>
Co-authored-by: go_gonzo <dawid.kaledkowski@gmail.com>
@gogonzo
Merge remote-tracking branch 'origin/main' into refactor
5fc7e29
@gogonzo
Merge branch 'main' into refactor
fb45dc8
@gogonzo
Redact vignettes (#205)
98a398d 
closes #174 
- new vignette for teal_data and for reproducibility
@kartikeyakirar @vedhav
get_code to return concatenated code string and removed `format_exp…
4c83688 
…ression` (#206)

part of insightsengineering/teal.code#176

---------

Signed-off-by: kartikeya kirar <kirar.kartikeya1@gmail.com>
Co-authored-by: Vedha Viyash <49812166+vedhav@users.noreply.github.com>
Co-authored-by: vedhav <vedhaviyash4@gmail.com>
m7pr and others added 9 commits November 29, 2023 15:22
@m7pr
export alias for get_code in teal.data
793f5fc
@m7pr @gogonzo @chlebowa
192 Improve get_code_dependency (Code Parser) (#201)
f00cffe 

---------

Signed-off-by: Marcin <133694481+m7pr@users.noreply.github.com>
Co-authored-by: Dawid Kałędkowski <6959016+gogonzo@users.noreply.github.com>
Co-authored-by: go_gonzo <dawid.kaledkowski@gmail.com>
Co-authored-by: Aleksander Chlebowski <114988527+chlebowa@users.noreply.github.com>
Co-authored-by: Aleksander Chlebowski <aleksander.chlebowski@contractors.roche.com>
fix vignette title
b69e484
@gogonzo
Merge remote-tracking branch 'origin/main' into refactor
9461f05
@gogonzo
Merge 9461f05 into b78d214
da281ec
@github-actions
[skip actions] Restyle files
7e42edb
@gogonzo
fix checks
c32c1fe
@gogonzo
fix pkgdown
df08a66
@gogonzo
remove unnecessary dependencies
a5c5154
chlebowa
chlebowa reviewed Dec 7, 2023
View reviewed changes
gogonzo and others added 4 commits December 7, 2023 11:35
@gogonzo @chlebowa
Apply suggestions from code review
25eb6af 
@chlebowa

Co-authored-by: Aleksander Chlebowski <114988527+chlebowa@users.noreply.github.com>
Signed-off-by: Dawid Kałędkowski <6959016+gogonzo@users.noreply.github.com>
@dependabot-preview
[skip actions] Roxygen Man Pages Auto Update
c79791f
@gogonzo @chlebowa
Update R/teal_data-get_code.R
4555834 
Co-authored-by: Aleksander Chlebowski <114988527+chlebowa@users.noreply.github.com>
Signed-off-by: Dawid Kałędkowski <6959016+gogonzo@users.noreply.github.com>
@gogonzo
ekhm
ed54f87
gogonzo and others added 2 commits December 7, 2023 12:58
@gogonzo
rename attribute from "__parents__" to "parents"
3d1215d
@gogonzo @chlebowa
Apply suggestions from code review
a0960f1 
@chlebowa

Co-authored-by: Aleksander Chlebowski <114988527+chlebowa@users.noreply.github.com>
Signed-off-by: Dawid Kałędkowski <6959016+gogonzo@users.noreply.github.com>
@averissimo
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averissimo commented Dec 7, 2023

Does it makes sense to cleanup linter tags? Comment on PR #212 against this branch

@gogonzo
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gogonzo commented Dec 7, 2023

Does it makes sense to cleanup linter tags? Comment on PR #212 against this branch

Perhaps, can we decide after merge? #212 targets main so it probably has to wait

averissimo
averissimo reviewed Dec 7, 2023
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averissimo
averissimo reviewed Dec 7, 2023
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@chlebowa @averissimo
unify error messages by @averissimo
9a84f1e 
Co-authored-by: André Veríssimo <211358+averissimo@users.noreply.github.com>
Signed-off-by: Aleksander Chlebowski <114988527+chlebowa@users.noreply.github.com>
@gogonzo gogonzo enabled auto-merge (squash) December 8, 2023 12:05
@vedhav vedhav self-requested a review December 8, 2023 12:19
@gogonzo gogonzo merged commit e69c282 into main Dec 8, 2023
@gogonzo gogonzo deleted the refactor branch December 8, 2023 12:19
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