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Library for IQTREE3#53

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bqminh merged 114 commits intoiqtree:masterfrom
thomaskf:libiqtree
Jun 23, 2025
Merged

Library for IQTREE3#53
bqminh merged 114 commits intoiqtree:masterfrom
thomaskf:libiqtree

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This is a pull request for building IQTREE library compatible with IQTREE3.

HuaiyanRen and others added 30 commits March 4, 2025 16:21
Allow to fix the parameters for RHAS when using mixture finder.
Allow all these options: MIX+MF, MIX+MFP, MF+MIX, MFP+MIX -- to run the mixture finder
…ing mixture finder.

Another option: -optfromgiven
The RHAS model will still be optimized according to the initial values same as the input parameters.
Fixed the issue happened when user specifies the RHAS model for mixture finder
thomaskf and others added 28 commits May 15, 2025 17:32
…xFinder and the initial values after MixFinder
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all good now, thanks

@bqminh bqminh merged commit 993275d into iqtree:master Jun 23, 2025
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3 participants