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Merged
rmcar17 merged 21 commits into from
Dec 12, 2025
Merged

ENH: Add AliSim #362

rmcar17 merged 21 commits into from
Dec 12, 2025

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@rmcar17
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@rmcar17 rmcar17 commented Dec 1, 2025 •
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Closes #168, #381, #382

Though documentation and extending testing required. (Also proper support for mixture models)

@rmcar17 rmcar17 enabled auto-merge (rebase) December 1, 2025 05:53
@rmcar17 rmcar17 disabled auto-merge December 1, 2025 05:55
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coveralls commented Dec 1, 2025 •
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Pull Request Test Coverage Report for Build 20168270148

Details

  • 161 of 163 (98.77%) changed or added relevant lines in 9 files are covered.
  • No unchanged relevant lines lost coverage.
  • Overall coverage increased (+0.3%) to 99.535%
Changes Missing Coverage Covered Lines Changed/Added Lines %
src/piqtree/model/_substitution_model.py 10 12 83.33%
Totals Coverage Status
Change from base Build 20136897955: 0.3%
Covered Lines: 2141
Relevant Lines: 2151
💛 - Coveralls

@rmcar17 rmcar17 enabled auto-merge (rebase) December 12, 2025 13:24
@rmcar17 rmcar17 disabled auto-merge December 12, 2025 13:24
This was linked to issues Dec 12, 2025
ENH: Add AliSim App #381
Closed
DOC: Write docs pages for AliSim #382
Closed
@rmcar17 rmcar17 self-assigned this Dec 12, 2025
@rmcar17 rmcar17 added the documentation Improvements or additions to documentation label Dec 12, 2025
@rmcar17 rmcar17 added the enhancement New feature or request label Dec 12, 2025
@rmcar17 rmcar17 added this to the Version 0.8 milestone Dec 12, 2025
@rmcar17 rmcar17 enabled auto-merge (rebase) December 12, 2025 13:30
auto-merge was automatically disabled December 12, 2025 13:34

Rebase failed

@rmcar17 rmcar17 merged commit c23d358 into iqtree:main Dec 12, 2025
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@rmcar17 rmcar17 deleted the alisim branch December 12, 2025 13:49
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DOC: Write docs pages for AliSim ENH: Add AliSim App ENH: implement AliSim

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