Feature/refresh saes #7
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- Fixed 23 instances of typo across 5 plot files - Updated docstrings in boxplot, violin, CDplot, HistoPlot, and Pplot
- Reorganized pyproject.toml dependencies into logical groups (test, dev, docs, html) - Added .editorconfig for consistent code style - Added .pre-commit-config.yaml for automated quality checks - Enhanced docs/conf.py to read version dynamically - Improved apv_procedures.py documentation
- Expanded CONTRIBUTING.md with detailed setup instructions - Added CODE_OF_CONDUCT.md based on Contributor Covenant v2.1 - Populated CHANGELOG.md with complete version history
- Added test_bayesian.py with 18 test cases - Tests cover bayesian_sign_test and bayesian_signed_rank_test - Includes tests for edge cases, error handling, and reproducibility
BREAKING CHANGE: Plot module imports have changed: - SAES.plots.CDplot → SAES.plots.cdplot - SAES.plots.HistoPlot → SAES.plots.histoplot - SAES.plots.Pplot → SAES.plots.pplot Updated all imports across: - Main application code - Test files - Documentation files - All Jupyter notebooks (user and template)
- Updated README.md and CONTRIBUTING.md with uv setup instructions - Modified GitHub Actions workflows to use uv - Updated test workflow to include html dependencies for full test coverage - Updated .gitignore for uv-specific files - Fixed plot module renames (CDplot→cdplot, HistoPlot→histoplot, Pplot→pplot) - All tests passing (81/81) - Verified notebooks work correctly - Verified GitHub Actions compatibility
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