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…oring When color_tree_by was set alongside a user chart that had its own color encoding (e.g. a titer plot colored by cell_line), Vega-Lite's default of sharing color scales across concat views merged the tree's color_value:N scale into the user chart's color scale. The user-chart domain was lost and its marks rendered without color. _concat_for_location now passes color="independent" to resolve_scale alongside the existing strain-axis resolution, so the tree's invented color_value:N scale stays isolated from whatever the user has on their chart. Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
`mark_line`, `mark_trail`, and `mark_area` now connect points in tree tip order regardless of other encodings on the chart. Previously, a ser chart with an explicit categorical color-scale `domain` rendered with crisscrossing line segments because Vega-Lite's default connection-order heuristic ignored the strain-axis sort. The package now attaches a `calculate` transform that derives a per-row tip rank and points the `order` channel at that field on these marks. Any user-supplied `order` is left in place.
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