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  1. CNV_analysis_pipeline CNV_analysis_pipeline Public

    Code to analyze Copy Number Variants (CNVs) based on allele-specific segmentation utilizing an open-source algorithm: Sequenza. Specifically, CNVs analysis is exemplified in matched normal/tumor sa…

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  2. HRD_genomic_instability_analysis HRD_genomic_instability_analysis Public

    Code to analyze genomic instability markers of Homologous Recombination Deficiency utilizing an open-source algorithm: ScarHRD.

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  3. Mutational_signatures Mutational_signatures Public

    SBS and INDEL signature analysis utilizing three open-source packages: SigMA, MutationalPatterns and mutSigExtractor.

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  4. Comprehensive-genomic-framework. Comprehensive-genomic-framework. Public

    Unified statistical and clinico-genomics approaches.

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