0.5.4

Fix a couple of regressions. Change some behavior.

Note:

• the columns of the output table support_lvl, tag and biotype have been renamed to tr_support_lvl, tr_tag, and tr_biotype. orf_id has been added. Additionally, rpb_in_ORF, rpb_out_ORF have been replaced in favor of reads_in_ORF and reads_out_ORF.
• from now on, if using correction flag. ORFs that are duplicate (possible after correction step) are removed. This behavior can be altered through the --keep_duplicates flag.

If you were already working on results from the output tables, it might be good to rerun riboformer yaml.yml --results to unify existing tables with new ones.