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0.6

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@jdcla jdcla released this 26 Mar 16:22
· 127 commits to main since this release
0.6
f11c43c

New features:

  • A GTF file featuring the top predictions is now also generated when compiling results.
    - --include_annotated : include annotated CDSs to generated GTF file

  • New flags for filtering behavior of the result output table:

    • --include_invalid_TTS : includes predicted ORFs with no valid in-frame stop codon in result table.
    • --min_ORF_len (default=15) : minimum nucleotide length of predicted translated ORFs included in result table.
    • --start_codons (default="*TG") : regular expression denoting valid start codon to be included in result table.

changed behavior:

  • IDs of merged samples now are concatenated using "&" instead of "@". This might require new data to be parsed again.
  • dropped --factor flag from riboformer.py
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