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v1.1.6

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@glucksfall glucksfall released this 26 Nov 18:44
· 299 commits to main since this release
v1.1.6
98d7158
  1. New essentiality.py module to perform gene knockouts and metabolite supplementation
  2. New model methods: MEModel.from_cobra, MEModel.minimize, MEModel.copy
  3. Code improvement: SyntaxWarnings and new logging messages
  4. New reconstruction options: flux_of_dna_constituents and genetic_recoding
  5. New HTML representation for models: Shows total number of process_data and pseudogenes in the reconstruction
  6. New HTML representation for reactions: Shows if the reaction is mass balanced
  7. New shortcuts in model: MEModel.perform_gene_knockouts, MEModel.to_json, and MEModel.to_pickle
  8. New shortcuts in components: MEComponent.add_boundary and MEComponent.get_fluxes
  9. Corrected MEReaction.copy and added ProcessData.copy
  10. Now you can choose solver for troubleshooting the model, e.g. solver="gurobi"
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