v2026.6.14: Bootstrap, end-to-end

Added

• bootstrap: mise bootstrap --only <part> as the inverse of --skip, accepting repeated/comma-separated phase names and mutually exclusive with --skip (#10607 by @jdx).
• bootstrap: mise bootstrap packages import / prune for Homebrew formulae, snapshotting requested installed formulae into [bootstrap.packages] and ledger-pruning only adopted formulae no longer needed by merged config (#10606 by @jdx).
• bootstrap: mise bootstrap status (alias ls) aggregates packages, dotfiles, macOS defaults, launchd, systemd, login shell, repos, shell activation, and [tools] into one report with --json and --missing (non-zero exit when anything is out of sync) (#10608, #10612 by @jdx).
• bootstrap: Consolidated bootstrap: follow-up summary listing deferred user actions (macOS defaults relaunches, login shell re-login, unavailable managers, OS-skipped phases) at the end of mise bootstrap; dry runs show follow-up if applied (#10609 by @jdx).
• bootstrap: Declarative [bootstrap.mise_shell_activate] config plus mise bootstrap shell apply/status to install marker-delimited mise activate/shims snippets in bash, zsh, and fish rc files (#10610 by @jdx).
• bootstrap: Path-keyed [bootstrap.repos] with mise bootstrap repos apply/status to clone/update git checkouts; runs after packages, before dotfiles, with pre-repos/post-repos hooks and safety checks for dirty trees and origin mismatches (#10611 by @jdx).
• bootstrap: Restructured mise bootstrap subcommands so visible CLI mirrors config sections (packages apply, dotfiles, mise-shell-activate, macos defaults, macos launchd-agents, linux systemd-units, repos); legacy paths kept as hidden aliases (#10613 by @jdx).
• brew: Built-in brew-cask installer now supports binary cask artifacts (e.g. 1Password CLI op), staging in the Caskroom and symlinking under the Homebrew prefix (#10604 by @jdx).
• backend: Asset platform detection now recognizes riscv64 (including riscv64gc) and loongarch64, so tools like aqua:astral-sh/uv install correctly on those hosts (#10506 by @elerch).

Fixed

• which: mise which now auto-enables prefer_offline, so binary lookups no longer make remote HTTP calls when an installed version satisfies the request, even with minimum_release_age configured (#10595 by @JamBalaya56562).
• sigstore: Sigstore TUF root fetches honor settings.url_replacements, fixing aqua cosign-verified installs (e.g. cosign@3.1.1) behind a mirror; the embedded production root is still pinned so a mirror cannot forge trust (#10596 by @JamBalaya56562).
• config: Treat symlinked global config paths as global so ~/.config/mise/conf.d/*.toml on Fedora Atomic / ostree (/home -> /var/home) is no longer flagged as non-global and stripped (#10597 by @JamBalaya56562).
• config: mise set and other TOML writes now target the nearest config directory before picking the lowest-precedence file in it, so nested projects no longer accidentally update a parent mise.toml (#10603 by @jdx).
• config: Return a clean read-only error instead of panicking when something tries to write to an idiomatic version file (e.g. mise use --path package.json) (#10602 by @jdx).
• github: github::get_headers returns an error rather than panicking on a relative URL, fixing an unwrap crash seen installing aqua:jdx/aube@v1.24.0 (#10591 by @risu729).
• hook-env: Suppress repeated untrusted-config warnings while staying in the same directory; leaving and re-entering, or editing .mise.toml, re-enables the warning, and explicit commands still report the full error (#10589 by @jdx).
• settings: mise settings set for a brand-new dotted key no longer emits an empty [settings] header before the nested [settings.foo] table (#10605 by @jdx).
• completions: Deduplicate plugin names in shell completion so mise ls --installed no longer surfaces duplicate plugin@ entries (#10351 by @zeitlinger).

Documentation

• Added a mise song page (#10614 by @jdx).

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