PySTRINGDB-client

STRING (string-db.org) is a database of Known and Predicted Protein-Protein Interactions. This Python library enables simple queries of the STRING api.

What it do

Currently this library only works for fetching interaction networks and their images, because that's what I needed. Potential future plans to cover the whole API some day maybe.

Installation

AFTER I POST THIS:

pip install pystringdb-client

Use

from pystringdb_client import stringdb

Resolve protein names to unique identifiers

matches = stringdb.resolve('ALK', species=9606)

Python requirements

Tested on Python 2.7.10 and 3.5.0.

Dependencies

• pandas
• requests
• six

Contributing

Feel free to report bugs, request features, or send pull requests!

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Released under the GPLv2 license.

@jonathanronen, Berlin Institute of Medical Systems Biology, 9/2015