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mpmsim v1.1.0

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@jonesor jonesor released this 03 Oct 11:47

mpmsim 1.1.0

  • modified the simulation of fecundity in random_mpm(). Now the values are provided as mean fecundity and can be provided as a range of values, whereby a value is drawn from a random uniform distribution. This is the best way to create a set of models with different fecundity properties.
  • added function to simulate the action of drivers such as weather on vital rates: drive_vital_rate().
  • added model_mortality() as an alias for model_survival().
  • function generate_mpm_set() now returns a CompadreDB object by default.
  • added full suite of unit tests using testthat. Test coverage 97.17%.

mpmsim 1.0.0

First release, with the following functionality.

  • Functions for simulating Lefkovitch matrix models: generate_mpm_set() andrandom_mpm().
  • A function for constructing Leslie matrix models: make_leslie_mpm(), which can make use of outputs from functions for describing demographic trajectories (model_fertility() and model_survival()).
  • Functions for calculating and propagating error: add_mpm_error(), calculate_errors() and compute_ci().
  • A utility function: plot_matrix()