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8. Benchmarks
jroussea edited this page Apr 16, 2025
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| Database | Time (hours.minutes.seconds) | Final size |
|---|---|---|
| Pfam database | ||
| AlphaFold clusters database |
LAGOON-MCL benchmarks will be run on METdb. Seven tests will be carried out with different dataset sizes.
| No. of transcriptomes | Total file size | No. of sequences | No. of alignments | Duration (hours.minutes.secondes) | CPU hours | Max. CPU used | Max. RAM used |
|---|---|---|---|---|---|---|---|
| 463 transcriptomes | 7.1 G | 15.432.763 | |||||
| 400 transcriptomes | 6.1 G | 13.165.910 | |||||
| 300 transcriptomes | 4.6 G | 9.923.888 | |||||
| 200 transcriptomes | 2.6 G | 6.375.391 | |||||
| 100 transcriptomes | 1.5 G | 3.115.476 | |||||
| 50 transcriptomes | 830 M | 1.783.565 | |||||
| 10 transcriptomes | 175 M | 384.910 | |||||
| 5_transcriptomes | 46 M | 76.361 | |||||
| 1_transcriptome | 32 M | 61.919 |