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LArGe cOmparative Omics Networks (LAGOON) Markov CLustering algorithm (MCL) is developed by the Atelier de BioInformatique team of the Institute of Systematics, Evolution, Biodiversity - UMR 7205 (National Museum of Natural History, Paris, France).
LAGOON-MCL is a new version of LAGOON developed by Dylan Klein.
LAGOON-MCL is a FAIR pipeline that uses Nextflow as a workflow manager. The objective of this pipeline is to be able to construct Putative Protein Family (clusters) using Markov CLustering algorithm and pairwise alignments obtained with Diamond.
- Nextflow version 23.10.0.5889
- Singularity version 4.1.0
- Diamond version 2.1.8
- SeqKit version 2.6.1
- Markov CLustering algorithm version 22-282
