[MAINT]: Repository maintenance

[synchon]

• description of feature/fix
• tests added/passed
• add an entry for the latest changes

This PR does general repository maintenance by updating .pre-commit-config.yaml, replacing black with ruff-format and updating tool configs.

[codecov]

Codecov Report

Attention: Patch coverage is 91.66667% with 1 line in your changes missing coverage. Please review.

Project coverage is 91.00%. Comparing base (4e30385) to head (6764fda).
Report is 25 commits behind head on main.

Files with missing lines	Patch %	Lines
junifer/utils/logging.py	83.33%	0 Missing and 1 partial ⚠️

❌ Your patch status has failed because the patch coverage (91.66%) is below the target coverage (95.00%). You can increase the patch coverage or adjust the target coverage.

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #441      +/-   ##
==========================================
+ Coverage   85.77%   91.00%   +5.22%     
==========================================
  Files         133      133              
  Lines        5675     5359     -316     
  Branches      962      893      -69     
==========================================
+ Hits         4868     4877       +9     
+ Misses        618      309     -309     
+ Partials      189      173      -16     

Flag	Coverage Δ
junifer	91.00% <91.66%> (+5.22%)	⬆️

Flags with carried forward coverage won't be shown. Click here to find out more.

Files with missing lines	Coverage Δ
junifer/api/decorators.py	100.00% <ø> (ø)
junifer/api/functions.py	91.36% <ø> (ø)
...er/api/queue_context/gnu_parallel_local_adapter.py	92.92% <ø> (ø)
junifer/api/queue_context/htcondor_adapter.py	96.00% <100.00%> (ø)
junifer/data/_dispatch.py	95.34% <ø> (+57.84%)	⬆️
...nifer/data/coordinates/_ants_coordinates_warper.py	100.00% <ø> (+61.90%)	⬆️
junifer/data/coordinates/_coordinates.py	100.00% <ø> (+20.28%)	⬆️
...unifer/data/coordinates/_fsl_coordinates_warper.py	100.00% <ø> (+50.00%)	⬆️
junifer/data/masks/_ants_mask_warper.py	76.92% <ø> (+49.42%)	⬆️
junifer/data/masks/_fsl_mask_warper.py	75.00% <ø> (+27.38%)	⬆️
... and 32 more

... and 2 files with indirect coverage changes

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[github-actions]

PR Preview Action v1.6.0
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[fraimondo]

Doesn't this PR needs to be rebased or merged on top of another? Seems that its adding covereage and adding the coordinates registry.

[synchon]

This PR is already rebased on main and it's removing the leftover files from coordinates and masks.

[synchon]

@fraimondo should be good for review now, the patch coverage is red but it's not a problem.

[synchon]

@fraimondo Can we get this in or do you have some review comments?