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[CI]: Disable FSL installation for junifer-ci Docker image #467

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Merged
synchon merged 2 commits into from
Sep 19, 2025
Merged

[CI]: Disable FSL installation for junifer-ci Docker image #467

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ab8a01c
chore: disable fsl install for junifer-ci
synchon Sep 19, 2025
f267849
chore: add changelog 467.misc
synchon Sep 19, 2025
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15 changes: 8 additions & 7 deletions Dockerfile-ci
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Original file line number Diff line number Diff line change
Expand Up @@ -60,13 +60,14 @@ ENV PATH="/opt/afni/bin:$PATH"
# Patch gsl
RUN ln -s /usr/lib/x86_64-linux-gnu/libgsl.so.27 /usr/lib/x86_64-linux-gnu/libgsl.so.23

# Add FSL
RUN curl https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fslinstaller.py | \
python - -d /opt/fsl/ --skip_registration
# Set env vars for FSL
ENV FSLDIR=/opt/fsl \
FSLOUTPUTTYPE=NIFTI_GZ \
PATH="/opt/fsl/share/fsl/bin:$PATH"
# disabled as standard github runner fails to install due to insufficient space on device
# # Add FSL
# RUN curl https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fslinstaller.py | \
# python - -d /opt/fsl/ --skip_registration
# # Set env vars for FSL
# ENV FSLDIR=/opt/fsl \
# FSLOUTPUTTYPE=NIFTI_GZ \
# PATH="/opt/fsl/share/fsl/bin:$PATH"

# Clean apt cache
RUN apt-get autoremove --purge && apt-get clean
1 change: 1 addition & 0 deletions docs/changes/newsfragments/467.misc
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@@ -0,0 +1 @@
Disable FSL installation for `junifer-ci` Docker image build with `junifer-data` v4 by `Synchon Mandal`_
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