[BUG]: Cannot compute markers on AOMIC ID1000 using native space#487
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[BUG]: Cannot compute markers on AOMIC ID1000 using native space#487
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fraimondo
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synchon
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@fraimondo Can you check if this branch solves your issue? Also you are working with native space data from the beginning, the SpaceWarper is likely not needed. |
fraimondo
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Mar 3, 2026
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Is there an existing issue for this?
Current Behavior
I want to compute ReHo/FC in native space. fMRIPrepConfoundRemover fails.
I get this error
Expected Behavior
Obtain markers in native space
Steps To Reproduce
Environment
junifer: version: 0.0.7.dev320 python: version: 3.12.7 implementation: CPython dependencies: click: 8.1.7 numpy: 1.26.4 scipy: 1.14.1 datalad: 1.1.3 pandas: 2.2.3 nibabel: 5.3.2 nilearn: 0.10.4 sqlalchemy: 2.0.36 ruamel.yaml: 0.18.6 templateflow: 24.2.2 lazy_loader: '0.4' looseversion: None junifer_data: None structlog: 25.5.0 system: platform: Linux-6.12.9+bpo-amd64-x86_64-with-glibc2.36 environment: PATH: /home/fraimondo/miniforge3/envs/junifer/bin:/home/fraimondo/.local/bin:/home/fraimondo/miniforge3/condabin:/usr/local/bin:/home/fraimondo/.vscode-server/data/User/globalStorage/github.copilot-chat/debugCommand:/home/fraimondo/.vscode-server/data/User/globalStorage/github.copilot-chat/copilotCli:/home/fraimondo/.vscode-server/cli/servers/Stable-072586267e68ece9a47aa43f8c108e0dcbf44622/server/bin/remote-cli:/home/fraimondo/.cargo/bin:/usr/local/bin:/usr/bin:/bin:/usr/games:/home/fraimondo/.vscode-server/extensions/ms-python.debugpy-2025.18.0-linux-x64/bundled/scripts/noConfigScriptsRelevant log output
Anything else?
No response