v0.9.2

Picasso 0.9.2 is here

Changelog

Important updates:

• Improved and updated sample notebooks.
• Render: FRC resolution implementation, see DOI: 10.1038/nmeth.2448. It is calculated for a currently loaded FOV and only one repeat is done. The exact implementation may change in the future versions.

Small improvements:

• picasso.lib.get_from_metadata function now has an option to raise a KeyError if the key is not found
• CMD: added undrift by fiducials (picasso undrift_fiducials)
• CMD: cleaned up .hdf5 conversion functions (picasso hdf2csv, picasso csv2hdf and more)
• The above functions were moved to picasso.io module (previously only in picasso.gui.render)
• Picasso: Average CMD was removed since no functionality was implemented

Bug fixes:

• AIM (picasso.aim.aim) copies localizations to avoid modifying the input DataFrame.
• AIM: fixed progress bar when no progress object is provided
• Localize: fixed CMD with GPUFit
• Simulate: fixed repetead axes tick labels
• SPINNA: fixed NND plot showing bins/lines outside of xlim
• SPINNA: extract the picked area based on the last .yaml file entry, not the first one (fixes the issue of incorrect densities extracted for localizations that were picked multiple times)
• SPINNA: enforce repeated generation of the search space when exp. data/densities/masks change
• CMD: pair correlation fixed (#588)

Notes

‼️ If installed in Program Files, Render and Localize may not be available for non-administrator users. Therefore, we recommend installing Picasso outside of Program Files. The current default location is C:\Picasso.
⚠️ Windows Safety features and Windows Defender may ask multiple times for permission during the installation and download.