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Version 1.0.1

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@jvasilakes jvasilakes released this 28 Oct 19:43

This bug fix release remedies a few entity linking issues with certain key concepts, such as vitamins and the cytochrome p450 gene family, which were getting mapped to overgeneral and nonsense concepts in the UMLS, respectively.

It comes along with the following code base improvements:

  • Centralization of all config files in lib/config
  • The idlib package is now explicitly aware of the KB version. See the new idlib.load_kb function.
  • Importing idlib.data_elements without specifying a KB version (and therefore set of config files) issues a UserWarning.