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cbioportalR 1.0.0

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@karissawhiting karissawhiting released this 10 Aug 16:31
v1.0.0
6c83c34

This is the first release submitted to CRAN, and includes all updates made since last Github release v0.1.0 (see NEWS for details on intermediate pre-CRAN versions). Package has been overhauled since first release (v0.1.0), and code will not be backwards compatible with that version. Future versions will be backwards compatible with v1.0.0.

Summary of Updates (since 0.1.0)

  • Authentication schema has been updated. Package-level environmental variable can now be set that specifies login credentials for that session
  • Functionality to pull fusion data has been added
  • Users can pull data by study ID, sample ID, and patient ID
  • Update get_genomics_by_sample() and related functions to pull all gene data available for select samples instead of pulling data for IMPACT genes only by default
  • Allow users to pass Hugo Symbols or Panel IDs to all get_genomics_by_sample() and related functions.
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