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Releases: knmkr/dbsnp-pg

0.7.1

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@knmkr knmkr released this 24 Feb 07:43
  • Fix order of unset rows WITH ORDINALITY
  • [web] Refactor with DRF

0.7.0

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@knmkr knmkr released this 18 Feb 12:54
  • Add b149 & Remove b144
  • Change Travis CI to Circle CI
  • [web] Rename /contrib/web/ to /web/
  • [web] Refactor to use Django REST framework

0.6.0

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@knmkr knmkr released this 07 Dec 01:51
  • Change license to AGPLv3
  • [contrib/freq] [contrib/web] Add genotype freq
  • [contrib/freq] [contrib/web] Add reference allele
  • [contrib/web] Add JSON API for /snps
  • [contrib/web] Add AWS Elastic Beanstalk settings
  • [contrib/web] Bump Django version to 1.10

0.5.6

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@knmkr knmkr released this 19 Jul 01:47

Topics

  • Add tables: OmimVarLocusIdSNP, SNP3D, MapLinkInfo, MapLink
  • [contrib/web] Impliment SNP details page

0.5.5

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@knmkr knmkr released this 04 May 16:21

Topics

  • Release whole dump of dbsnp-pg (build146, GRCh37 only)
  • Remove contrib/deploy

0.5.4

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@knmkr knmkr released this 03 May 01:55

Topics

  • Update dbSNP version (add b146, remove b142)
  • Add bin/dbsnp-pg-ctl init-demo command for initialize demo database
  • Add ContigInfo and SNPContigLoc tables
  • [contrib/web] Add chrom/pos in query results
  • [contrib/web] Add choice UI for allele freq soruce

0.5.3

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@knmkr knmkr released this 04 Mar 09:32

Topics

  • [contrib/freq] Improve query response time for getting allele freq
  • [contrib/freq] Add plink option to calculate allele freq
  • [contrib/web] Add query search page to get allele freq

0.5.2

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@knmkr knmkr released this 11 Dec 06:47

Topics

  • [contrib/freq] [contrib/gwascatalog] Support European, African, Global

0.5.1

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@knmkr knmkr released this 17 Nov 10:38

Topics

  • [contrib/gwascatalog] Fix import and export script for gwascatalog table

Notes

  • [contrib/gwascatalog] Start to release gwascatalog tsv files

0.5.0

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@knmkr knmkr released this 09 Oct 09:41

Topics

  • [contrib/web] Implement Django web app example
  • [contrib/freq] Change to store freq as Array data type, instead of using aggregation queries
  • [contrib/freq] Change to use vcftools to calculate allele freq
  • [contrib/deploy] Add dbsnp_pg_min_freq role in ansible playbook
  • [contrib/gwascatalog] Fix header names of gwascatalog table
  • Fix argument errors in 01_fetch_data.sh
  • Implement scripts for pg_dump/pg_restore

Notes

  • Start to release pg_dump files
  • Because of travis build errors, tests are run on local machine.