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v0.3.2 — Ramachandran plot generation

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@krisss0mecom krisss0mecom released this 01 May 20:08
· 14 commits to main since this release
v0.3.2
2f6c17b

What's new

  • New --plot flag for the predict subcommand. Generates a labelled
    Ramachandran density map (PNG) annotated with canonical basins
    (alpha-R, beta, PPII, alpha-L). For peptides up to 16 residues the
    plot also includes per-residue panels.
  • Interactive mode now asks 'Save Ramachandran plot? [Y/n]'.
  • matplotlib stays optional: install via pip install 'alphadynamics[viz]'.
  • Plugin SKILL.md updated so Claude Code can drive --plot from natural
    language ('plot Ramachandran for KLVFFAE').

Headline (unchanged)

  • Mean canonical Ramachandran JSD 0.196 vs Microsoft Timewarp 0.468
    on the 4AA benchmark (2.39x lower, 3/3 peptide wins) at ~123K
    parameters total.
Assets 4
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