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Welcome to the leo.sc wiki!

Just use simple command to install this packages:

pak::pkg_install("laleoarrow/leo.sc")

or

devtools::install_github("laleoarrow/leo.sc")

However, the leo.sc require quite a lot packages of dependancy, some of which might be difficult to install all together. In this case, it is wise to pre-install these packages.

• Augur: https://github.com/neurorestore/Augur

devtools::install_github("Bioconductor/MatrixGenerics")
devtools::install_github("const-ae/sparseMatrixStats")
devtools::install_github("neurorestore/Augur")

• DoubletFinder: https://github.com/chris-mcginnis-ucsf/DoubletFinder

remotes::install_github('chris-mcginnis-ucsf/DoubletFinder', force = TRUE)

• Nebulosa: https://github.com/powellgenomicslab/Nebulosa

if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager")
BiocManager::install("Nebulosa")
# or
devtools::install_github("powellgenomicslab/Nebulosa")

• Rougue: https://htmlpreview.github.io/?https://github.com/PaulingLiu/ROGUE/blob/master/vignettes/ROGUE_Tutorials.html

if (!requireNamespace("devtools", quietly = TRUE)) install.packages("devtools")
devtools::install_github("PaulingLiu/ROGUE")

• MiloR: https://github.com/MarioniLab/miloR

BiocManager::install("miloR")

• Others:

install.packages("ggalluvial")
install.packages("tableone")