Inference#5
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First version of FAST5 inference written. Improved signal masking.
Few bugfixes for inference.
Added model downloading to rockfish package Fixed bug regarding deletion of temp files during feature generation RFTrainDataset now return singleton indicator variable instead of fixed weight Renamed functions in inference Added reference as required parameter Surpressing warnings regarding missing keys in ckpt dict (removed weights not important for inference) iterative_inference.py renamed to rf_inference.py Renamed functions in rf_inference.py Renamed functions in model.py Model will now not create weights if some auxilliary task is not used Fixed imports in model.py Added singleton weight hyperparameter Don't use pytorch-lightning 1.6 (problems with logging) Added gdown as dependency (for model download) .gitignore now ignores everything in rockfish/data/ except download.py Added example script Added README file
Fix imports in rf_inference.py
Added download link to small model Supressing warnings for missing unusued weights in rf_inference.py
Example script now uses 8 workers for inference
Updated evaluation section of README Added acknowledgement
Added conda activation step
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Merge working version.