This repository accompanies the manuscript Animals, protists and bacteria share marine biogeographic patterns which can be found here. Descriptions of scripts and folders can be found below.
| File Name | Description |
|---|---|
| 0.Script.Bioinformatics.txt | Bioinformatic script used to analyse data on Amazon EC2 instances |
| 0.Script.prep.R | Script used to prepare data for analysis |
| 1.Script.main.R | Main analysis script for figures and ecological analysis of data |
| 2.Script.suppl.R | Script associated with supplementary information |
| ARCHIVE | Archived files |
| Taxonomy | Taxonomy files, databases and outputs |
| cleaned | Cleaned datasets |
| controls | Control datasets |
| figures | Figure outputs |
| metadata | Metadata |
| model.output | Model outputs from analyses |
| rawdata | Raw datasets after bioinformatic analysis |
| supplement | Supplementary data for analysis |
