Update _extract_allc.py - fix BED formatting from allC file#52
Merged
lhqing merged 2 commits intolhqing:masterfrom Jul 9, 2024
Merged
Update _extract_allc.py - fix BED formatting from allC file#52lhqing merged 2 commits intolhqing:masterfrom
lhqing merged 2 commits intolhqing:masterfrom
Conversation
fixed creating a BED file from input allC: start position now 0 based end posiiton remains 1 based - This is correct BED format previously: start and end were 1 based (copied from allC format)
for more information, see https://pre-commit.ci
Owner
|
LGTM, thanks! |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
fixed creating a BED file from input allC:
start position now 0 based
end posiiton remains 1 based
previously:
start and end were 1 based (copied from allC format)
Issue stems from: https://docs.google.com/presentation/d/1kdfRzt2CKg0s_GjaMSHUaLh-vqtXCyTdVmFt15Vcm6Y/edit?usp=sharing