STAARpipeline_v0.9.8.1

STAARpipeline package version v0.9.8.1

• allows for ancestry-informed single variant analysis of dichotomous traits using saddlepoint approximation (AI-GWA-SPA) through AI_Individual_Analysis()
• includes new scripts to improve the stability of ancestry-informed common and rare variant association analyses

STAARpipeline_v0.9.8

STAARpipeline package version v0.9.8

• introduces an ancestry-informed framework to leverage allelic heterogeneity by ancestry in common and rare variant association analysis of whole genome sequencing data, including both single variant analysis (AI-GWA) using AI_Individual_Analysis() and variant set analysis (AI-STAAR).

STAARpipeline_v0.9.7.2

STAARpipeline package version v0.9.7.2

• adds a parameter rv_num_cutoff_max and rv_num_cutoff_max_prefilter to allow for a user-specified maximum number of variants for a given variant set

STAARpipeline_v0.9.7.1

STAARpipeline package version v0.9.7.1

• fixes an issue on format not a string literal and no format arguments [-Werror=format-security] from Rf_error(CHAR(rcpp_msgSEXP_gen)); in Rcpp

STAARpipeline_v0.9.7

STAARpipeline package version v0.9.7

• allows for the analysis of multiple correlated traits using MultiSTAAR
• allows for the analysis of dichotomous traits with imbalanced case-control ratios using saddlepoint approximation
• allows for the analysis of protein-truncating variants (ptv) and protein-truncating variants/disruptive missense variants (ptv_ds) in gene-centric coding analysis

STAARpipeline_v0.9.7_beta

STAARpipeline package beta version v0.9.7

• allows for the analysis of multiple correlated traits using MultiSTAAR

STAARpipeline_v0.9.6

STAARpipeline package version v0.9.6

• first release