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1. BestTranslationFrameUsingAReference BestTranslationFrameUsingAReference Public

   Program that translate nucleotide sequences to proteins using the frame that is more similar to a reference protein. Only search in the frames +1, +2, +3.

   Python

2. RemoveSingletons RemoveSingletons Public

   Program that read a FASTA file and filter the sequences according to their frequency value. The frequency is calculated by the "fastx_collapser" software of the FASTX toolkit suite.

   Python

3. FastQ_ReadFilterByLength FastQ_ReadFilterByLength Public

   Program that read a FASTQ file and filter the sequences according to their length.

   Python

4. MSAPairwiseIdentity MSAPairwiseIdentity Public

   Program that read a multiple sequence alignment in FASTA format and calculate all the pairwise indentities.

   Python

5. FastaBreakIntoSmallerFiles FastaBreakIntoSmallerFiles Public

   program that read a FASTA file and break it into smaller fasta files with N number of sequences per file.

   Python

6. FluVar FluVar Public

   R