chore(main): release 0.8.5 by liblaf[bot] · Pull Request #81 · liblaf/melon

liblaf · 2025-11-11T18:17:04Z

🤖 I have created a release beep boop

0.8.5 (2025-11-12)

🐛 Bug Fixes

io: preserve mesh data integrity during OBJ/PLY save/load operations (55b63ec)

♻️ Code Refactoring

ext/wrap: Remove point order preservation hack in fast_wrapping (33aad99)

This PR was generated with Release Please. See documentation.

liblaf · 2025-11-11T18:18:38Z

✅⚠️MegaLinter analysis: Success with warnings

Descriptor	Linter	Files	Fixed	Errors	Warnings	Elapsed time
⚠️ COPYPASTE	jscpd	yes		17	no	2.72s
⚠️ JSON	prettier	20	0	1	0	0.5s
✅ JSON	v8r	20		0	0	6.15s
⚠️ PYTHON	ruff	yes	yes	142	no	3.07s
✅ REPOSITORY	git_diff	yes		no	no	0.11s
✅ SPELL	cspell	172		0	0	4.97s
✅ YAML	prettier	4	0	0	0	0.47s
✅ YAML	v8r	4		0	0	4.33s
✅ YAML	yamllint	4		0	0	0.39s

Detailed Issues

⚠️ COPYPASTE / jscpd - 17 errors

Clone found (python):
 - src/liblaf/melon/io/paraview/series/_shared.py [6:1 - 18:2] (12 lines, 104 tokens)
   src/liblaf/melon/io/paraview/series/_writer.py [16:1 - 28:2]

Clone found (python):
 - exp/2025/04/30/human-head-anatomy/src/33-muscle-fraction.py [31:5 - 36:6] (5 lines, 81 tokens)
   exp/2025/04/30/human-head-anatomy/src/34-muscles.py [38:5 - 43:6]

Clone found (python):
 - exp/2025/04/30/human-head-anatomy/src/33-muscle-fraction.py [80:7 - 86:15] (6 lines, 82 tokens)
   exp/2025/04/30/human-head-anatomy/src/34-muscles.py [99:11 - 105:23]

Clone found (python):
 - exp/2025/04/30/human-head-anatomy/src/31-inspect-volumns.py [17:5 - 23:8] (6 lines, 101 tokens)
   exp/2025/04/30/human-head-anatomy/src/32-muscle-direction.py [17:5 - 23:4]

Clone found (python):
 - exp/2025/04/30/human-head-anatomy/src/30-inspect-muscles.py [13:21 - 21:8] (8 lines, 77 tokens)
   exp/2025/04/30/human-head-anatomy/src/32-muscle-direction.py [13:30 - 21:14]

Clone found (python):
 - exp/2025/04/30/human-head-anatomy/src/23-split-components.py [25:6 - 35:2] (10 lines, 92 tokens)
   exp/2025/04/30/human-head-anatomy/src/40-gen-expression.py [15:4 - 25:2]

Clone found (python):
 - exp/2025/04/30/human-head-anatomy/src/23-split-components.py [36:5 - 50:4] (14 lines, 139 tokens)
   exp/2025/04/30/human-head-anatomy/src/40-gen-expression.py [26:5 - 40:6]

Clone found (python):
 - exp/2025/04/30/human-head-anatomy/src/21-shortest-path-skin.py [34:5 - 47:2] (13 lines, 196 tokens)
   exp/2025/04/30/human-head-anatomy/src/22-shortest-path.py [36:5 - 49:2]

Clone found (python):
 - exp/2025/04/30/human-head-anatomy/src/15-find-jaw-pivot.py [6:1 - 17:7] (11 lines, 103 tokens)
   exp/2025/04/30/human-head-anatomy/src/32-muscle-direction.py [7:1 - 18:5]

Clone found (python):
 - exp/2025/04/30/human-head-anatomy/src/14-register-cranium.py [19:33 - 42:2] (23 lines, 219 tokens)
   exp/2025/04/30/human-head-anatomy/src/14-register-mandible.py [19:34 - 42:2]

Clone found (python):
 - exp/2025/04/30/human-head-anatomy/src/12-register-skin.py [28:30 - 38:23] (10 lines, 120 tokens)
   exp/2025/04/30/human-head-anatomy/src/14-register-mandible.py [20:5 - 29:7]

Clone found (python):
 - src/liblaf/melon/tri/_wrapping.py [13:1 - 20:5] (7 lines, 94 tokens)
   src/liblaf/melon/ext/wrap/_fast_wrapping.py [16:1 - 23:6]

Clone found (python):
 - src/liblaf/melon/transfer/_tri_point.py [61:1 - 74:2] (13 lines, 142 tokens)
   src/liblaf/melon/transfer/_tri_point_to_tet.py [36:1 - 49:2]

Clone found (python):
 - src/liblaf/melon/transfer/_tri_cell_to_point_category.py [18:36 - 27:7] (9 lines, 108 tokens)
   src/liblaf/melon/transfer/_tri_point.py [20:19 - 29:7]

Clone found (python):
 - src/liblaf/melon/transfer/_tri_cell_to_point_category.py [28:2 - 37:7] (9 lines, 136 tokens)
   src/liblaf/melon/transfer/_tri_point.py [29:7 - 38:7]

Clone found (python):
 - src/liblaf/melon/transfer/_tri_cell_to_point_category.py [56:10 - 65:2] (9 lines, 85 tokens)
   src/liblaf/melon/transfer/_tri_point_to_tet.py [40:11 - 49:2]

Clone found (python):
 - src/liblaf/melon/tetra/_transfer.py [15:33 - 22:17] (7 lines, 89 tokens)
   src/liblaf/melon/tri/_transfer.py [21:20 - 28:9]

┌────────┬────────────────┬─────────────┬──────────────┬──────────────┬──────────────────┬───────────────────┐
│ Format │ Files analyzed │ Total lines │ Total tokens │ Clones found │ Duplicated lines │ Duplicated tokens │
├────────┼────────────────┼─────────────┼──────────────┼──────────────┼──────────────────┼───────────────────┤
│ python │ 112            │ 3517        │ 35410        │ 17           │ 172 (4.89%)      │ 1968 (5.56%)      │
├────────┼────────────────┼─────────────┼──────────────┼──────────────┼──────────────────┼───────────────────┤
│ bash   │ 9              │ 212         │ 1345         │ 0            │ 0 (0%)           │ 0 (0%)            │
├────────┼────────────────┼─────────────┼──────────────┼──────────────┼──────────────────┼───────────────────┤
│ Total: │ 121            │ 3729        │ 36755        │ 17           │ 172 (4.61%)      │ 1968 (5.35%)      │
└────────┴────────────────┴─────────────┴──────────────┴──────────────┴──────────────────┴───────────────────┘
Found 17 clones.
HTML report saved to megalinter-reports/copy-paste/html/
ERROR: jscpd found too many duplicates (4.61%) over threshold (0%)
Error: ERROR: jscpd found too many duplicates (4.61%) over threshold (0%)
    at ThresholdReporter.report (/node-deps/node_modules/@jscpd/finder/dist/index.js:612:13)
    at /node-deps/node_modules/@jscpd/finder/dist/index.js:110:18
    at Array.forEach (<anonymous>)
    at /node-deps/node_modules/@jscpd/finder/dist/index.js:109:22
    at async /node-deps/node_modules/jscpd/dist/jscpd.js:351:5

⚠️ JSON / prettier - 1 error

.config/linters/pyrightconfig.json 69ms (unchanged)
.config/release-please/config.json 18ms (unchanged)
.github/renovate.json 3ms (unchanged)
.vscode/settings.json 7ms (unchanged)
[error] exp/2025/04/30/human-head-anatomy/data/01-raw/XYZ_ReadyToSculpt_eyesOpen_PolyGroups_GEO.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:74cac07560a0ac93e15b334d49841c637a59a44de0708f7aaf08cbcbf2e8f469
[error]   3 | size 719
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/01-raw/sculptor/cranium.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:766aedc9c892ef6cc830caffe266bcd28fb8fd00d9a144533e2c4739bb266cbd
[error]   3 | size 429
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/01-raw/sculptor/face.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:e458b1bb67aa33ac9db931cb0d6d6d685429cfb7d46417c1b333af46924ad85f
[error]   3 | size 800
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/01-raw/sculptor/mandible.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:f1e16d8631ac4cc730978f0422778d005ce78102daf535fdfe7b745259b86e3a
[error]   3 | size 476
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/01-raw/sculptor/skull.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:4df392ea2d66a5057ceefc7b5191760f6791e48bcfda3b55a3138f91f26989ff
[error]   3 | size 1215
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/02-intermediate/11-skin.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:018f3bce8052b47b9a953ec89a9703fdd68c16454ba3e8bd849aab4eb9b6da6d
[error]   3 | size 719
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/02-intermediate/12-skin.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:018f3bce8052b47b9a953ec89a9703fdd68c16454ba3e8bd849aab4eb9b6da6d
[error]   3 | size 719
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/02-intermediate/13-cranium.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:45e42f3615dfd055ca57fd118c2c4b9a87dd20480fb79b8954b44feaf295cecb
[error]   3 | size 430
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/02-intermediate/13-mandible.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:2ad40f18b58f1870f85705d3583e7b09d182bc2a110884a40dee313da812285b
[error]   3 | size 474
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/02-intermediate/14-cranium.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:45e42f3615dfd055ca57fd118c2c4b9a87dd20480fb79b8954b44feaf295cecb
[error]   3 | size 430
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/02-intermediate/14-mandible.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:2ad40f18b58f1870f85705d3583e7b09d182bc2a110884a40dee313da812285b
[error]   3 | size 474
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/02-intermediate/skin-with-mouth-socket.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:5846defd42970713d2bcdd08b798fd2653346de4662129e1fffbe4521b41f1ad
[error]   3 | size 715
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/02-intermediate/skin.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:8a9430700a2b0e825304625d59107487f31f39c67421260dd9949f57b267ad3f
[error]   3 | size 804
[error]   4 |
pyrightconfig.json 2ms (unchanged)
tmp.6NE8UxMvCk/linters/pyrightconfig.json 2ms (unchanged)
tmp.6NE8UxMvCk/renovate-config.json 2ms (unchanged)

⚠️ PYTHON / ruff - 142 errors

F722 Syntax error in forward annotation: Unexpected token at the end of an expression
  --> exp/2025/04/30/cubic/src/10-gen.py:26:40
   |
24 |     for cid, cell in enumerate(tetmesh.cell):
25 |         cell: pv.Cell
26 |         barycentric: Float[np.ndarray, "N 3"] = melon.sample_barycentric_coords(
   |                                        ^^^^^
27 |             (cfg.n_samples, 4)
28 |         )
   |

F722 Syntax error in forward annotation: Unexpected token at the end of an expression
  --> exp/2025/04/30/cubic/src/10-gen.py:29:36
   |
27 |             (cfg.n_samples, 4)
28 |         )
29 |         samples: Float[np.ndarray, "N 3"] = melon.barycentric_to_points(
   |                                    ^^^^^
30 |             einops.repeat(cell.points, "B D -> N B D", N=cfg.n_samples), barycentric
31 |         )
   |

F722 Syntax error in forward annotation: Expected an expression
  --> exp/2025/04/30/cubic/src/10-gen.py:32:33
   |
30 |             einops.repeat(cell.points, "B D -> N B D", N=cfg.n_samples), barycentric
31 |         )
32 |         is_in: Bool[np.ndarray, " N"] = melon.tri.contains(muscle, samples)
   |                                 ^^^^
33 |         tetmesh.cell_data["muscle-fraction"][cid] = (
34 |             np.count_nonzero(is_in) / cfg.n_samples
   |

F722 Syntax error in forward annotation: Expected an expression
  --> exp/2025/04/30/human-head-anatomy/src/11-fix-skin.py:25:37
   |
23 |     skin_right.translate([left_xmax - right_xmin, 0.0, 0.0], inplace=True)
24 |     skin: pv.PolyData = pv.merge([skin_right, skin_left])
25 |     edge_lengths: Float[np.ndarray, " E"] = melon.tri.compute_edge_lengths(skin)
   |                                     ^^^^
26 |     skin.clean(tolerance=0.5 * edge_lengths.min(), inplace=True, absolute=True)
27 |     melon.save(cfg.output, skin)
   |

F722 Syntax error in forward annotation: Unexpected token at the end of an expression
  --> exp/2025/04/30/human-head-anatomy/src/12-register-skin.py:35:41
   |
33 |     source.clean(inplace=True)
34 |     target: pv.PolyData = melon.load_polydata(cfg.target)
35 |     source_landmarks: Float[np.ndarray, "L 3"] = melon.load_landmarks(cfg.source)
   |                                         ^^^^^
36 |     target_landmarks: Float[np.ndarray, "L 3"] = melon.load_landmarks(cfg.target)
   |

F722 Syntax error in forward annotation: Unexpected token at the end of an expression
  --> exp/2025/04/30/human-head-anatomy/src/12-register-skin.py:36:41
   |
34 |     target: pv.PolyData = melon.load_polydata(cfg.target)
35 |     source_landmarks: Float[np.ndarray, "L 3"] = melon.load_landmarks(cfg.source)
36 |     target_landmarks: Float[np.ndarray, "L 3"] = melon.load_landmarks(cfg.target)
   |                                         ^^^^^
37 |
38 |     free_polygons_floating: Integer[np.ndarray, " F"] = melon.tri.select_groups(
   |

F722 Syntax error in forward annotation: Expected an expression
  --> exp/2025/04/30/human-head-anatomy/src/12-register-skin.py:38:49
   |
36 |     target_landmarks: Float[np.ndarray, "L 3"] = melon.load_landmarks(cfg.target)
37 |
38 |     free_polygons_floating: Integer[np.ndarray, " F"] = melon.tri.select_groups(
   |                                                 ^^^^
39 |         source, cfg.floting
40 |     )
   |

F722 Syntax error in forward annotation: Unexpected token at the end of an expression
  --> exp/2025/04/30/human-head-anatomy/src/14-register-cranium.py:27:41
   |
25 |     source.clean(inplace=True)
26 |     target: pv.PolyData = melon.load_polydata(cfg.target)
27 |     source_landmarks: Float[np.ndarray, "L 3"] = melon.load_landmarks(cfg.source)
   |                                         ^^^^^
28 |     target_landmarks: Float[np.ndarray, "L 3"] = melon.load_landmarks(cfg.target)
29 |     result: pv.PolyData = melon.tri.fast_wrapping(
   |

F722 Syntax error in forward annotation: Unexpected token at the end of an expression
  --> exp/2025/04/30/human-head-anatomy/src/14-register-cranium.py:28:41
   |
26 |     target: pv.PolyData = melon.load_polydata(cfg.target)
27 |     source_landmarks: Float[np.ndarray, "L 3"] = melon.load_landmarks(cfg.source)
28 |     target_landmarks: Float[np.ndarray, "L 3"] = melon.load_landmarks(cfg.target)
   |                                         ^^^^^
29 |     result: pv.PolyData = melon.tri.fast_wrapping(
30 |         source,
   |

F722 Syntax error in forward annotation: Unexpected token at the end of an expression
  --> exp/2025/04/30/human-head-anatomy/src/14-register-mandible.py:27:41
   |
25 |     source.clean(inplace=True)
26 |     target: pv.PolyData = melon.load_polydata(cfg.target)
27 |     source_landmarks: Float[np.ndarray, "L 3"] = melon.load_landmarks(cfg.source)
   |                                         ^^^^^
28 |     target_landmarks: Float[np.ndarray, "L 3"] = melon.load_landmarks(cfg.target)
29 |     result: pv.PolyData = melon.tri.fast_wrapping(
   |

F722 Syntax error in forward annotation: Unexpected token at the end of an expression
  --> exp/2025/04/30/human-head-anatomy/src/14-register-mandible.py:28:41
   |
26 |     target: pv.PolyData = melon.load_polydata(cfg.target)
27 |     source_landmarks: Float[np.ndarray, "L 3"] = melon.load_landmarks(cfg.source)
28 |     target_landmarks: Float[np.ndarray, "L 3"] = melon.load_landmarks(cfg.target)
   |                                         ^^^^^
29 |     result: pv.PolyData = melon.tri.fast_wrapping(
30 |         source,
   |

F722 Syntax error in forward annotation: Expected an expression
  --> exp/2025/04/30/human-head-anatomy/src/23-split-components.py:22:23
   |
20 | def classify(
21 |     surface: pv.PolyData, include: pv.PolyData, exclude: pv.PolyData
22 | ) -> Bool[np.ndarray, " N"]:
   |                       ^^^^
23 |     nearest_algo: melon.NearestAlgorithm = melon.NearestPointOnSurface(
24 |         distance_threshold=np.inf,
   |

F722 Syntax error in forward annotation: Expected an expression
  --> exp/2025/04/30/human-head-anatomy/src/23-split-components.py:34:34
   |
32 |         exclude, surface, algo=nearest_algo
33 |     )
34 |     is_include: Bool[np.ndarray, " N"] = (
   |                                  ^^^^
35 |         nearest_include["distance"] <= nearest_exclude["distance"]
36 |     )
   |

F722 Syntax error in forward annotation: Expected an expression
  --> exp/2025/04/30/human-head-anatomy/src/23-split-components.py:43:36
   |
41 |     tetmesh: pv.UnstructuredGrid, surface: pv.PolyData, data_name: str
42 | ) -> pv.UnstructuredGrid:
43 |     point_ids: Integer[np.ndarray, " N"] = surface.point_data["point-id"]
   |                                    ^^^^
44 |     data: Bool[np.ndarray, " N"] = np.zeros((tetmesh.n_points,), dtype=bool)
45 |     data[point_ids[surface.point_data[data_name]]] = True
   |

F722 Syntax error in forward annotation: Expected an expression
  --> exp/2025/04/30/human-head-anatomy/src/23-split-components.py:44:28
   |
42 | ) -> pv.UnstructuredGrid:
43 |     point_ids: Integer[np.ndarray, " N"] = surface.point_data["point-id"]
44 |     data: Bool[np.ndarray, " N"] = np.zeros((tetmesh.n_points,), dtype=bool)
   |                            ^^^^
45 |     data[point_ids[surface.point_data[data_name]]] = True
46 |     tetmesh.point_data[data_name] = data
   |

F722 Syntax error in forward annotation: Expected an expression
  --> exp/2025/04/30/human-head-anatomy/src/32-muscle-direction.py:31:39
   |
30 |     for muscle in muscles:
31 |         components: Float[np.ndarray, " 3"] = melon.as_trimesh(
   |                                       ^^^^
32 |             muscle
33 |         ).principal_inertia_components
   |

F722 Syntax error in forward annotation: Unexpected token at the end of an expression
  --> exp/2025/04/30/human-head-anatomy/src/32-muscle-direction.py:34:36
   |
32 |             muscle
33 |         ).principal_inertia_components
34 |         vectors: Float[np.ndarray, "3 3"] = melon.as_trimesh(
   |                                    ^^^^^
35 |             muscle
36 |         ).principal_inertia_vectors
   |

F722 Syntax error in forward annotation: Expected an expression
  --> exp/2025/04/30/human-head-anatomy/src/32-muscle-direction.py:37:36
   |
35 |             muscle
36 |         ).principal_inertia_vectors
37 |         index: Integer[np.ndarray, " 3"] = np.argsort(components)
   |                                    ^^^^
38 |         muscle.field_data["moment-inertia"] = melon.as_trimesh(muscle).moment_inertia
39 |         muscle.field_data["principal-inertia-vectors"] = vectors[index]
   |

F722 Syntax error in forward annotation: Unexpected token at the end of an expression
  --> exp/2025/04/30/human-head-anatomy/src/33-muscle-fraction.py:43:36
   |
41 |     for muscle in muscles:
42 |         muscle_tm: tm.Trimesh = melon.as_trimesh(muscle)
43 |         vectors: Float[np.ndarray, "3 3"] = muscle_tm.principal_inertia_vectors
   |                                    ^^^^^
44 |         components: Float[np.ndarray, " 3"] = muscle_tm.principal_inertia_components
45 |         index: Integer[np.ndarray, " 3"] = np.argsort(components)
   |

F722 Syntax error in forward annotation: Expected an expression
  --> exp/2025/04/30/human-head-anatomy/src/33-muscle-fraction.py:44:39
   |
42 |         muscle_tm: tm.Trimesh = melon.as_trimesh(muscle)
43 |         vectors: Float[np.ndarray, "3 3"] = muscle_tm.principal_inertia_vectors
44 |         components: Float[np.ndarray, " 3"] = muscle_tm.principal_inertia_components
   |                                       ^^^^
45 |         index: Integer[np.ndarray, " 3"] = np.argsort(components)
46 |         muscle.field_data["muscle-direction"] = vectors[index[0]]
   |

F722 Syntax error in forward annotation: Expected an expression
  --> exp/2025/04/30/human-head-anatomy/src/33-muscle-fraction.py:45:36
   |
43 |         vectors: Float[np.ndarray, "3 3"] = muscle_tm.principal_inertia_vectors
44 |         components: Float[np.ndarray, " 3"] = muscle_tm.principal_inertia_components
45 |         index: Integer[np.ndarray, " 3"] = np.argsort(components)
   |                                    ^^^^
46 |         muscle.field_data["muscle-direction"] = vectors[index[0]]
   |

F722 Syntax error in forward annotation: Expected an expression
  --> exp/2025/04/30/human-head-anatomy/src/33-muscle-fraction.py:74:41
   |
72 |     cid: int
73 |     major_muscle: str | None = None
74 |     muscle_direction: Float[np.ndarray, " 3"]
   |                                         ^^^^
75 |     muscle_fraction: float
   |

F722 Syntax error in forward annotation: Unexpected token at the end of an expression
  --> exp/2025/04/30/human-head-anatomy/src/33-muscle-fraction.py:82:36
   |
80 | ) -> Result:
81 |     cell: pv.Cell = tetmesh.get_cell(cid)
82 |     barycentric: Float[np.ndarray, "N 3"] = melon.sample_barycentric_coords(
   |                                    ^^^^^
83 |         (n_samples, 4)
84 |     )
   |

F722 Syntax error in forward annotation: Unexpected token at the end of an expression
  --> exp/2025/04/30/human-head-anatomy/src/33-muscle-fraction.py:85:32
   |
83 |         (n_samples, 4)
84 |     )
85 |     samples: Float[np.ndarray, "N 3"] = melon.barycentric_to_points(
   |                                ^^^^^
86 |         einops.repeat(cell.points, "B D -> N B D", N=n_samples), barycentric
87 |     )
   |

F722 Syntax error in forward annotation: Expected an expression
  --> exp/2025/04/30/human-head-anatomy/src/33-muscle-fraction.py:88:29
   |
86 |         einops.repeat(cell.points, "B D -> N B D", N=n_samples), barycentric
87 |     )
88 |     is_in: Bool[np.ndarray, " N"] = np.zeros((n_samples,), dtype=bool)
   |                             ^^^^
89 |     muscle_direction: Float[np.ndarray, " 3"] = np.zeros((3,))
90 |     muscle_fraction: float = 0.0
   |

F722 Syntax error in forward annotation: Expected an expression
  --> exp/2025/04/30/human-head-anatomy/src/33-muscle-fraction.py:89:41
   |
87 |     )
88 |     is_in: Bool[np.ndarray, " N"] = np.zeros((n_samples,), dtype=bool)
89 |     muscle_direction: Float[np.ndarray, " 3"] = np.zeros((3,))
   |                                         ^^^^
90 |     muscle_fraction: float = 0.0
91 |     major_muscle: pv.PolyData | None = None
   |

F722 Syntax error in forward annotation: Expected an expression
  --> exp/2025/04/30/human-head-anatomy/src/33-muscle-fraction.py:94:36
   |
92 |     major_muscle_fraction: float = 0.0
93 |     for muscle in muscles:
94 |         contains: Bool[np.ndarray, " N"] = melon.tri.contains(muscle, samples)
   |                                    ^^^^
95 |         n_contains: int = np.count_nonzero(contains)  # pyright: ignore[reportAssignmentType]
96 |         if n_contains == 0:
   |

F722 Syntax error in forward annotation: Unexpected token at the end of an expression
  --> exp/2025/04/30/human-head-anatomy/src/34-muscles.py:53:36
   |
51 |     for muscle in muscles:
52 |         muscle_tm: tm.Trimesh = melon.as_trimesh(muscle)
53 |         vectors: Float[np.ndarray, "3 3"] = muscle_tm.principal_inertia_vectors
   |                                    ^^^^^
54 |         components: Float[np.ndarray, " 3"] = muscle_tm.principal_inertia_components
55 |         vectors = vectors[np.argsort(components)]
   |

F722 Syntax error in forward annotation: Expected an expres

(Truncated to 13333 characters out of 65310)

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✅ All modified and coverable lines are covered by tests.
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@@           Coverage Diff           @@
##             main      #81   +/-   ##
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=======================================
  Files          87       87           
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  Branches      105      105           
=======================================
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  Misses        595      595           
  Partials       13       13

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liblaf · 2025-11-16T01:01:17Z

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