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Update pyproject.toml#155

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amc-corey-cox merged 2 commits into
mainfrom
Add-schemasheets-to-project
Aug 29, 2025
Merged

Update pyproject.toml#155
amc-corey-cox merged 2 commits into
mainfrom
Add-schemasheets-to-project

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@twhetzel twhetzel commented Aug 27, 2025

Add schemasheets to project. This tool was tested and documented before the Makefile existed.

The poetry.lock file was updated by running poetry.lock

Add schemasheets to project. This tool was tested and documented before the Makefile existed.
@twhetzel twhetzel requested a review from amc-corey-cox August 27, 2025 15:06
The file was updated by running `poetry lock`
@amc-corey-cox amc-corey-cox merged commit 0caf36a into main Aug 29, 2025
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@amc-corey-cox amc-corey-cox deleted the Add-schemasheets-to-project branch August 29, 2025 12:56
amc-corey-cox added a commit that referenced this pull request Mar 26, 2026
- Pin linkml-map to cross-table-populated-from branch (includes #155 + #159 + #166 fix)
- Add age_at_observation cross-table join to body height and HDL cholesterol
  specs (pht000002/pht000003 → pht000001 via dbGaP_Subject_ID)
- Add test_mapping_cross_table_age integration test asserting age * 365 = 14600
- Rename dotted column names in pre_cleaned toy data (participant.id → participant_external_id,
  study.id → study_id) — transform_spec engine interprets dots as join paths
amc-corey-cox added a commit that referenced this pull request May 15, 2026
Sigfried's prior pin (53ad099) predated the --target-schema CLI flag.
PR #235 head adds it plus the schema_path/target_class forwarding needed
by the post-#155 directory-input flow that main now uses.
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