Missing dependencies

[leongross]

Issue:

When building libnvme the build fails due to the missing pyhon3 development headers.

$ meson .build
The Meson build system
Version: 0.54.2
Source dir: /home/ec2-user/libnvme
Build dir: /home/ec2-user/libnvme/.build
Build type: native build
Project name: libnvme
Project version: v0.1
C compiler for the host machine: cc (gcc 7.5.0 "cc (SUSE Linux) 7.5.0")
C linker for the host machine: cc ld.bfd 2.35.1.20201123-7
C++ compiler for the host machine: c++ (gcc 7.5.0 "c++ (SUSE Linux) 7.5.0")
C++ linker for the host machine: c++ ld.bfd 2.35.1.20201123-7
Host machine cpu family: x86_64
Host machine cpu: x86_64
Found pkg-config: /usr/bin/pkg-config (0.29.2)
Run-time dependency uuid found: YES 2.33.1
Run-time dependency json-c found: YES 0.15
Checking if "__builtin_type_compatible_p" compiles: YES
Checking if "typeof" compiles: YES
Checking if "byteswap.h" compiles: YES
Checking if "bswap64" links: YES
Checking if "statement-expr" compiles: YES
Checking if "isblank" links: YES
Configuring config.h using configuration
Configuring libnvme.spec using configuration
Program python3 found: YES (/usr/bin/python3)
Program swig found: YES (/usr/bin/swig)
Dependency python found: YES (sysconfig)
Build targets in project: 10

Found ninja-1.10.0 at /usr/bin/ninja
$ cd .build/
$ ninja
[18/27] Compiling C object 'pynvme/37eb337@@_nvme.cpython-36m-x86_64-linux-gnu@sha/meson-generated_.._nvme_wrap.c.o'
FAILED: pynvme/37eb337@@_nvme.cpython-36m-x86_64-linux-gnu@sha/meson-generated_.._nvme_wrap.c.o
cc -Ipynvme/37eb337@@_nvme.cpython-36m-x86_64-linux-gnu@sha -Ipynvme -I../pynvme -I. -I.. -I../ccan -Isrc -I../src -I/usr/include/python3.6m -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -O3 -fomit-frame-pointer -D_GNU_SOURCE -include config.h -fPIC -MD -MQ 'pynvme/37eb337@@_nvme.cpython-36m-x86_64-linux-gnu@sha/meson-generated_.._nvme_wrap.c.o' -MF 'pynvme/37eb337@@_nvme.cpython-36m-x86_64-linux-gnu@sha/meson-generated_.._nvme_wrap.c.o.d' -o 'pynvme/37eb337@@_nvme.cpython-36m-x86_64-linux-gnu@sha/meson-generated_.._nvme_wrap.c.o' -c pynvme/nvme_wrap.c
pynvme/nvme_wrap.c:149:11: fatal error: Python.h: No such file or directory
 # include <Python.h>
           ^~~~~~~~~~
compilation terminated.
[19/27] Generating symbol file 'src/25a6634@@nvme@sha/libnvme.so.0.0.0.symbols'
ninja: build stopped: subcommand failed.

Fix

Add python3-devel to meson dependencies. I would do it myself but I never used meson in dev, so I figured someone else would be faster than me adding this small feature.

[igaw]

I think we should make the Python binding optional in the build process too.

[martin-belanger]

@igaw

I resolved this issue with this pull request: #73

[leongross]

@martin-belanger thanks for making the python bindings optional. But as I see it, your commit does not seem to take care of the original issue with the python development headers? Maybe a separate issue should be opened for the changes you suggested or at least this issue should be kept alive.

[martin-belanger]

I tested the changes on two systems: one with the Python development headers and one without. On the first system, meson detects the presence of the headers and proceeds to include Python in the build. On the second system, meson determines that the headers are missing and excludes Python from the build. The following shows what I tested and the expected results:

System with Python development headers:

meson .build                 # 'auto' mode. meson detects the presence of the Python headers and includes Python in the build.
meson .build -Dpython=true   # meson includes Python in the build.
meson .build -Dpython=false  # meson excludes Python from the build.

System without Python development headers:

meson .build                 # 'auto' mode. meson detects the absence of the Python headers and excludes Python from the build.
meson .build -Dpython=true   # meson correctly fails configuration because the Python headers are missing
meson .build -Dpython=false  # meson excludes Python from the build.

@leongross Do you see a different behavior on your system? Or maybe I don't understand what you are asking.

[leongross]

I just set up a new machine without python headers and set up the project containing your changes:

$ git status
On branch fix-python-dependency
Your branch is up to date with 'origin/fix-python-dependency'.

nothing to commit, working tree clean

Then I ran meson in auto mode which should detect the missing headers:

$ meson .build
The Meson build system
Version: 0.54.2
Source dir: /home/ec2-user/libnvme
Build dir: /home/ec2-user/libnvme/.build
Build type: native build
Project name: libnvme
Project version: v0.1
C compiler for the host machine: cc (gcc 7.5.0 "cc (SUSE Linux) 7.5.0")
C linker for the host machine: cc ld.bfd 2.35.1.20201123-7
C++ compiler for the host machine: c++ (gcc 7.5.0 "c++ (SUSE Linux) 7.5.0")
C++ linker for the host machine: c++ ld.bfd 2.35.1.20201123-7
Host machine cpu family: x86_64
Host machine cpu: x86_64
Found pkg-config: /usr/bin/pkg-config (0.29.2)
Run-time dependency uuid found: YES 2.33.1
Run-time dependency json-c found: YES 0.15
Checking if "__builtin_type_compatible_p" compiles: YES
Checking if "typeof" compiles: YES
Checking if "byteswap.h" compiles: YES
Checking if "bswap64" links: YES
Checking if "statement-expr" compiles: YES
Checking if "isblank" links: YES
Configuring config.h using configuration
Configuring libnvme.spec using configuration
Program python3 found: YES (/usr/bin/python3)
Dependency python found: YES (sysconfig)
Program swig found: YES (/usr/bin/swig)
Build targets in project: 10

$ cd .build/ && ninja
FAILED: pynvme/37eb337@@_nvme.cpython-36m-x86_64-linux-gnu@sha/meson-generated_.._nvme_wrap.c.o
cc -Ipynvme/37eb337@@_nvme.cpython-36m-x86_64-linux-gnu@sha -Ipynvme -I../pynvme -I. -I.. -I../ccan -Isrc -I../src -I/usr/include/python3.6m -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -O3 -fomit-frame-pointer -D_GNU_SOURCE -include config.h -fPIC -MD -MQ 'pynvme/37eb337@@_nvme.cpython-36m-x86_64-linux-gnu@sha/meson-generated_.._nvme_wrap.c.o' -MF 'pynvme/37eb337@@_nvme.cpython-36m-x86_64-linux-gnu@sha/meson-generated_.._nvme_wrap.c.o.d' -o 'pynvme/37eb337@@_nvme.cpython-36m-x86_64-linux-gnu@sha/meson-generated_.._nvme_wrap.c.o' -c pynvme/nvme_wrap.c
pynvme/nvme_wrap.c:149:11: fatal error: Python.h: No such file or directory
 # include <Python.h>
           ^~~~~~~~~~
compilation terminated.
[19/27] Generating symbol file 'src/25a6634@@nvme@sha/libnvme.so.0.0.0.symbols'
ninja: build stopped: subcommand failed.

It seems that there is something wrong with the detection or are there steps I am missing?

Running meson .build -Dpython=false works fine though.

$ meson .build -Dpython=false
The Meson build system
Version: 0.54.2
Source dir: /home/ec2-user/libnvme
Build dir: /home/ec2-user/libnvme/.build
Build type: native build
Project name: libnvme
Project version: v0.1
C compiler for the host machine: cc (gcc 7.5.0 "cc (SUSE Linux) 7.5.0")
C linker for the host machine: cc ld.bfd 2.35.1.20201123-7
C++ compiler for the host machine: c++ (gcc 7.5.0 "c++ (SUSE Linux) 7.5.0")
C++ linker for the host machine: c++ ld.bfd 2.35.1.20201123-7
Host machine cpu family: x86_64
Host machine cpu: x86_64
Found pkg-config: /usr/bin/pkg-config (0.29.2)
Run-time dependency uuid found: YES 2.33.1
Run-time dependency json-c found: YES 0.15
Checking if "__builtin_type_compatible_p" compiles: YES
Checking if "typeof" compiles: YES
Checking if "byteswap.h" compiles: YES
Checking if "bswap64" links: YES
Checking if "statement-expr" compiles: YES
Checking if "isblank" links: YES
Configuring config.h using configuration
Configuring libnvme.spec using configuration
Build targets in project: 8

$ cd .build/ && ninja
[24/24] Linking target test/test-cpp

[martin-belanger]

That's interesting. It says Dependency python found: YES (sysconfig) even though the headers are not installed. I'll see what I can do to fix that. It would help to know what's your system (Linux distro, packages installed, etc.). Thanks.

[leongross]

The setup I ran the code on is as follows:

$ uname -a
Linux 5.3.18-24.86-default #1 SMP Tue Oct 5 06:52:50 UTC 2021 (c909dd5) x86_64 x86_64 x86_64 GNU/Linux

$ cat /etc/os-release
NAME="SLES"
VERSION="15-SP2"
VERSION_ID="15.2"
PRETTY_NAME="SUSE Linux Enterprise Server 15 SP2"
ID="sles"
ID_LIKE="suse"
ANSI_COLOR="0;32"
CPE_NAME="cpe:/o:suse:sles:15:sp2"

And here the list of all the installed packages:

$ rpm -qa --last | awk {'print $1'}
libonig4-6.7.0-1.19.x86_64
libjq1-1.6-3.3.1.x86_64
jq-1.6-3.3.1.x86_64
rpm-ndb-4.14.1-22.4.2.x86_64
python3-rpm-4.14.1-22.4.1.x86_64
kernel-default-5.3.18-24.86.2.x86_64
krb5-client-1.16.3-3.24.1.x86_64
kmod-compat-25-6.10.1.x86_64
perl-Bootloader-0.931-3.5.1.x86_64
libkmod2-25-6.10.1.x86_64
krb5-1.16.3-3.24.1.x86_64
kmod-25-6.10.1.x86_64
libstdc++6-pp-gcc10-10.3.0+git1587-1.6.4.x86_64
gdb-10.1-8.24.1.x86_64
babeltrace-1.5.3-2.22.x86_64
ltrace-0.7.91-4.3.x86_64
python3-devel-3.6.13-3.84.1.x86_64
cmake-full-3.17.0-1.17.x86_64
cmake-3.17.0-1.13.x86_64
librhash0-1.3.5-1.25.x86_64
libjsoncpp19-1.8.4-1.17.x86_64
swig-3.0.12-4.18.x86_64
meson-0.54.2-3.3.1.noarch
ninja-1.10.0-1.24.x86_64
python3-kmod-0.9.1-2.15.x86_64
nvmetcli-0.7-5.6.1.noarch
patterns-devel-base-devel_basis-20170319-6.17.x86_64
git-email-2.26.2-33.1.x86_64
git-cvs-2.26.2-33.1.x86_64
git-2.26.2-33.1.x86_64
gcc7-c++-7.5.0+r278197-4.25.1.x86_64
gcc-c++-7-3.9.1.x86_64
gcc-7-3.9.1.x86_64
libtool-2.4.6-3.4.1.x86_64
gcc7-7.5.0+r278197-4.25.1.x86_64
cpp-7-3.9.1.x86_64
openldap2-devel-2.4.46-9.58.1.x86_64
cpp7-7.5.0+r278197-4.25.1.x86_64
automake-1.15.1-4.10.2.noarch
perl-MailTools-2.19-1.20.noarch
perl-DBD-SQLite-1.54-1.31.x86_64
libmpc3-1.1.0-1.47.x86_64
libdb-4_8-devel-4.8.30-7.3.1.x86_64
libaio-devel-0.3.109-1.25.x86_64
git-svn-2.26.2-33.1.x86_64
flex-2.6.4-3.157.x86_64
cyrus-sasl-devel-2.1.26-5.7.1.x86_64
autoconf-2.69-1.445.noarch
subversion-perl-1.10.6-3.18.1.x86_64
subversion-bash-completion-1.10.6-3.18.1.noarch
perl-Text-Unidecode-1.30-1.443.noarch
perl-Net-SMTP-SSL-1.04-1.3.1.noarch
perl-Authen-SASL-2.16-1.3.1.noarch
makeinfo-6.5-4.17.x86_64
gperf-3.1-1.27.x86_64
gitk-2.26.2-33.1.x86_64
git-gui-2.26.2-33.1.x86_64
gcc7-info-7.5.0+r278197-4.25.1.noarch
gcc-info-7-3.9.1.x86_64
cvsps-2.1-1.19.x86_64
libstdc++-devel-7-3.9.1.x86_64
libext2fs-devel-1.43.8-4.26.1.x86_64
gettext-tools-0.19.8.1-4.11.1.x86_64
e2fsprogs-devel-1.43.8-4.26.1.x86_64
cvs-1.12.12-2.30.x86_64
binutils-devel-2.35.1-7.18.1.x86_64
bin86-0.16.21-1.28.x86_64
libstdc++6-devel-gcc7-7.5.0+r278197-4.25.1.x86_64
libcom_err-devel-1.43.8-4.26.1.x86_64
bison-lang-3.0.4-3.3.1.noarch
zlib-devel-1.2.11-3.21.1.x86_64
pam-devel-1.3.0-6.38.1.x86_64
libblkid-devel-2.33.1-4.13.1.x86_64
gmp-devel-6.1.2-4.6.1.x86_64
bison-3.0.4-3.3.1.x86_64
tk-8.6.7-3.6.3.x86_64
subversion-1.10.6-3.18.1.x86_64
perl-TimeDate-2.30-3.9.1.noarch
perl-DBI-1.642-3.9.1.x86_64
patterns-base-basesystem-20200124-4.12.1.x86_64
ncurses-devel-6.1-5.6.2.x86_64
m4-1.4.18-4.3.1.x86_64
libuuid-devel-2.33.1-4.13.1.x86_64
libubsan0-7.5.0+r278197-4.25.1.x86_64
libtsan0-10.3.0+git1587-1.6.4.x86_64
libserf-1-1-1.3.9-2.31.x86_64
libmpfr6-4.0.2-3.3.1.x86_64
libltdl7-2.4.6-3.4.1.x86_64
liblsan0-10.3.0+git1587-1.6.4.x86_64
libitm1-10.3.0+git1587-1.6.4.x86_64
libgomp1-10.3.0+git1587-1.6.4.x86_64
libgmpxx4-6.1.2-4.6.1.x86_64
libcilkrts5-7.5.0+r278197-4.25.1.x86_64
libatomic1-10.3.0+git1587-1.6.4.x86_64
libasan4-7.5.0+r278197-4.25.1.x86_64
libapparmor-devel-2.13.4-3.3.1.x86_64
glibc-info-2.26-13.59.1.noarch
glibc-devel-2.26-13.59.1.x86_64
xhost-1.0.7-1.29.x86_64
tack-6.1-5.6.2.x86_64
perl-Term-ReadKey-2.37-1.20.x86_64
perl-Net-SSLeay-1.88-1.44.x86_64
perl-IO-Socket-SSL-2.066-1.44.noarch
perl-Digest-HMAC-1.03-1.22.noarch
patch-2.7.6-3.5.x86_64
make-lang-4.2.1-7.3.2.noarch
make-4.2.1-7.3.2.x86_64
linux-glibc-devel-5.3-1.75.x86_64
libapr-util1-1.6.1-10.21.x86_64
libutf8proc2-2.1.0-1.7.x86_64
libmpxwrappers2-8.2.1+r264010-1.3.7.x86_64
libmpx2-8.2.1+r264010-1.3.7.x86_64
libisl15-0.18-1.443.x86_64
libfl-devel-2.6.4-3.157.x86_64
libapr1-1.6.3-3.3.8.x86_64
libXss1-1.2.2-3.4.x86_64
libXmuu1-1.1.2-1.30.x86_64
libXft2-2.3.2-1.33.x86_64
gdbm-devel-1.12-1.418.x86_64
bash-completion-devel-2.7-4.3.1.noarch
nvme-cli-1.10-4.15.1.x86_64
cloud-regionsrv-client-plugin-ec2-1.0.1-6.46.1.noarch
python3-ec2imgutils-9.0.1-3.20.1.noarch
cloud-regionsrv-client-9.2.0-6.46.1.noarch
aws-cli-1.19.9-26.1.noarch
sle-module-containers-release-15.2-50.1.x86_64
regionServiceClientConfigEC2-3.0.0-3.14.1.noarch
cloud-init-20.2-8.48.1.x86_64
yast2-snapper-4.2.0-1.152.x86_64
yast2-registration-4.2.46-3.9.2.noarch
yast2-migration-4.2.5-3.3.1.noarch
sle-module-python2-release-15.2-51.1.x86_64
crash-kmp-default-7.2.8_k5.3.18_24.67-18.7.1.x86_64
autoyast2-installation-4.2.56-3.23.1.noarch
yast2-update-4.2.22-3.10.1.x86_64
yast2-installation-4.2.53-3.31.2.noarch
yast2-ftp-server-4.2.6-3.3.1.noarch
yast2-users-4.2.13-3.6.1.x86_64
yast2-tune-4.2.5-3.5.1.x86_64
yast2-security-4.2.25-3.27.1.noarch
yast2-samba-client-4.2.4-3.3.1.noarch
yast2-ntp-client-4.2.12-3.3.1.noarch
yast2-nis-server-4.2.3-3.3.1.noarch
yast2-network-4.2.105-3.67.1.noarch
yast2-iscsi-client-4.2.7-3.3.1.noarch
yast2-country-4.2.23-3.11.1.x86_64
yast2-bootloader-4.2.28-3.9.1.x86_64
yast2-storage-ng-4.2.115-3.17.2.x86_64
python3-botocore-1.20.9-33.1.noarch
python3-boto3-1.17.9-19.1.noarch
yast2-packager-4.2.69-3.15.1.x86_64
yast2-nfs-server-4.2.5-3.3.1.noarch
yast2-firewall-4.2.6-3.6.1.noarch
python3-requests-2.24.0-6.10.2.noarch
kernel-default-5.3.18-24.83.2.x86_64
yast2-4.2.95-3.33.1.x86_64
python3-urllib3-1.25.10-9.14.1.noarch
patterns-base-minimal_base-20200124-4.12.1.x86_64
docker-bash-completion-20.10.6_ce-153.1.noarch
docker-20.10.6_ce-153.1.x86_64
containerd-1.4.4-5.36.1.x86_64
snapper-zypp-plugin-0.8.9-2.20.x86_64
sles-release-15.2-52.8.2.x86_64
runc-1.0.0~rc93-1.17.1.x86_64
libdconf1-0.34.0-2.27.x86_64
gsettings-backend-dconf-0.34.0-2.27.x86_64
glib-networking-lang-2.62.3-1.29.noarch
xdg-utils-1.1.3+20190413-1.24.noarch
snapper-0.8.9-2.20.x86_64
rollback-helper-1.0+git20181218.5394d6e-4.3.1.noarch
zypper-search-packages-plugin-0.7-5.35.noarch
zypper-lifecycle-plugin-0.6.1490613702.a925823-2.43.noarch
python3-brotlipy-0.7.0-3.3.1.x86_64
perl-Net-DBus-1.1.0-1.30.x86_64
libsnapper5-0.8.9-2.20.x86_64
gxditview-1.22.3-5.3.1.x86_64
groff-full-1.22.3-5.3.1.x86_64
groff-1.22.3-5.3.1.x86_64
glib-networking-2.62.3-1.29.x86_64
dconf-0.34.0-2.27.x86_64
samba-python3-4.11.14+git.260.32282693e40-4.22.2.x86_64
kdump-0.9.0-11.6.1.x86_64
dhcp-client-4.3.6.P1-6.11.1.x86_64
kexec-tools-2.0.20-5.6.1.x86_64
ghostscript-x11-9.52-155.1.x86_64
dhcp-4.3.6.P1-6.11.1.x86_64
samba-4.11.14+git.260.32282693e40-4.22.2.x86_64
libstorage-ng-ruby-4.2.77-3.10.1.x86_64
git-core-2.26.2-33.1.x86_64
cups-filters-1.25.0-3.3.1.x86_64
sysconfig-netconfig-0.85.6-9.1.x86_64
suse-module-tools-15.2.13-4.6.1.x86_64
btrfsmaintenance-0.4.2-3.3.1.noarch
cronie-1.5.1-70.14.4.1.x86_64
open-iscsi-2.1.4-22.14.1.x86_64
cups-2.2.7-3.26.1.x86_64
sysconfig-0.85.6-9.1.x86_64
supportutils-3.1.17-5.34.1.noarch
polkit-default-privs-13.2+20201209.bd89a77-3.3.3.noarch
openssh-helpers-8.1p1-5.18.1.x86_64
libstorage-ng1-4.2.77-3.10.1.x86_64
dracut-049.1+suse.203.g8ee14a90-3.35.1.x86_64
ghostscript-9.52-155.1.x86_64
cron-4.2-70.14.4.1.x86_64
btrfsprogs-4.19.1-8.6.2.x86_64
autofs-5.1.3-7.6.1.x86_64
lvm2-2.03.05-8.36.1.x86_64
libopeniscsiusr0_2_0-2.1.4-22.14.1.x86_64
irqbalance-1.4.0-12.6.1.x86_64
openssh-8.1p1-5.18.1.x86_64
nscd-2.26-13.59.1.x86_64
systemd-sysvinit-234-24.93.1.x86_64
systemd-coredump-234-24.93.1.x86_64
samba-client-4.11.14+git.260.32282693e40-4.22.2.x86_64
rsyslog-8.39.0-4.10.1.x86_64
util-linux-systemd-2.33.1-4.13.2.x86_64
polkit-0.116-3.3.1.x86_64
udev-234-24.93.1.x86_64
libpolkit0-0.116-3.3.1.x86_64
grub2-systemd-sleep-plugin-2.04-9.49.3.noarch
SUSEConnect-0.3.31-13.1.x86_64
systemd-234-24.93.1.x86_64
libpoppler-cpp0-0.79.0-3.3.1.x86_64
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[martin-belanger]

@leongross - From what you provided I can see that package python3-devel is installed on your system. This is the package that provides Python.h. And Python.h should be located in /usr/include/python[ver]/. Also note that meson says that it found the dependency through sysconfig and not pkg-config.

Dependency python found: YES (sysconfig)

On my Fedora 34 I get this message from meson showing that the dependency was found through pkgconfig:

Dependency python found: YES (pkgconfig)

I think that's the root cause of the problem. I'll need more time to research this and figure out a solution.

BTW, could you check whether Python.h is found anywhere under /usr/include/? Also what does pkg-config --cflags python3-devel say?

Thanks.

[martin-belanger]

@leongross - Could you also check one more thing.

Open file libnvme/.build/meson-logs/meson-log.txt and look for Dependency python found: YES (sysconfig). That should tell you how meson determined whether the Python-devel package was installed and how it is setting the -I option for the C compiler. In my case, it looks like this (note the line highlighted with <<<<<<<<<<).

Determining dependency 'python-3.9' with pkg-config executable '/usr/bin/pkg-config'
env[PKG_CONFIG_LIBDIR]: /usr/lib64/pkgconfig
env[PKG_CONFIG_PATH]: 
Called `/usr/bin/pkg-config --modversion python-3.9` -> 0
3.9
env[PKG_CONFIG_LIBDIR]: /usr/lib64/pkgconfig
env[PKG_CONFIG_PATH]: 
Called `/usr/bin/pkg-config --cflags python-3.9` -> 0
-I/usr/include/python3.9                                # <<<<<<<<<<<<<<<<<<  Setting -I option  
env[PKG_CONFIG_LIBDIR]: /usr/lib64/pkgconfig
env[PKG_CONFIG_ALLOW_SYSTEM_LIBS]: 1
env[PKG_CONFIG_PATH]: 
Called `/usr/bin/pkg-config --libs python-3.9` -> 0

env[PKG_CONFIG_LIBDIR]: /usr/lib64/pkgconfig
env[PKG_CONFIG_PATH]: 
Called `/usr/bin/pkg-config --libs python-3.9` -> 0

Found "python-3.9" via pkgconfig lookup in LIBPC (/usr/lib64/pkgconfig)
Dependency python found: YES (pkgconfig)

[igaw]

I think the problem is that the found Python interpreter is version 3.9 and the devel package is for 3.6. I suppose, to make it really waterproof a test program needs to be compiled.