MRI_Brain_Preprocessing

Code examples of the MRI brain pre processing

Create virtualenv

mkdir .venv
python -m venv .venv
source .venv/bin/activate

pip install -r requirements.txt

I selected sample images and templates from the following sources

Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
10_brain_extraction_with_template.ipynb		10_brain_extraction_with_template.ipynb
1_library_review.ipynb		1_library_review.ipynb
2_img_orientation.ipynb		2_img_orientation.ipynb
3_common_operations.ipynb		3_common_operations.ipynb
4_bias_field_correction.ipynb		4_bias_field_correction.ipynb
5_templates_and_masks.ipynb		5_templates_and_masks.ipynb
6_intensity_normalization.ipynb		6_intensity_normalization.ipynb
7_registration.ipynb		7_registration.ipynb
8_registration_and_masks.ipynb		8_registration_and_masks.ipynb
9_brain_extraction_with_antspynet.ipynb		9_brain_extraction_with_antspynet.ipynb
README.md		README.md
help_functions.py		help_functions.py