fix: Improve iOS native navigation and graphs

[tiensonqin]

Summary

• replace the iOS graphs tab with native UI and native graph actions
• smooth native tab, search, calendar, dialog, and graph navigation flows
• switch graphs refresh from a header button to pull-to-refresh
• fix lint cleanup needed by the full validation command

Validation

• rtk bb dev:lint-and-test
• rtk xcodebuild -workspace ios/App/App.xcworkspace -scheme Logseq -configuration Debug -destination 'generic/platform=iOS' build\n\n## Notes\n- Device/simulator runtime verification was handled separately during the bugfix iterations; this PR creation step did not rerun device testing.

[Copilot]

Pull request overview

This PR improves mobile native navigation, especially iOS tab/search/dialog flows, and replaces the iOS graphs tab with a native SwiftUI-backed graph list/actions bridge.

Changes:

• Adds native iOS graph list rendering, graph actions, pull-to-refresh, and JS/native graph bridge updates.
• Adjusts mobile navigation stack synchronization, search tab transitions, top bar behavior, and bottom sheet dismissal timing.
• Updates mobile dev HTTPS setup, docs, ignore rules, and adds navigation regression tests.

Reviewed changes

Copilot reviewed 21 out of 23 changed files in this pull request and generated 7 comments.

Show a summary per file

File	Description
src/test/mobile/navigation_test.cljs	Adds regression tests for mobile stack switching, pop-to-root, and search state transitions.
src/main/mobile/state.cljs	Changes search tab leave behavior to preserve query state while resetting stack history.
src/main/mobile/navigation.cljs	Updates stack sync, browser route synchronization, duplicate push handling, and reset navigation typing.
src/main/mobile/components/popup.cljs	Adds native bottom sheet content-ready notification after dismissal.
src/main/mobile/components/header.cljs	Adds iOS graph-specific top bar behavior and native graph creation popup handling.
src/main/mobile/components/app.cljs	Adds native graph section/action payload generation and iOS bridge effects.
src/main/mobile/bottom_tabs.cljs	Adds native graph update/action listeners and refines search/tab event handling.
src/main/frontend/components/repo.cljs	Keeps mobile graph download popup open while starting remote graph download.
shadow-cljs.edn	Adds optional HTTPS Shadow CLJS dev server configuration.
scripts/src/logseq/tasks/dev/mobile.clj	Adds mobile HTTPS certificate generation and updates iOS/Android mobile dev tasks.
ios/App/App/Utils.swift	Adds debug-only server trust handling for HTTPS dev server loading.
ios/App/App/UILocalPlugin.swift	Improves date picker completion/cancel handling and multiline alert drops.
ios/App/App/SharedWebViewController.swift	Detaches shared webview using the actual current parent.
ios/App/App/NativeTopBarPlugin.swift	Disables nav bar hide/show animation.
ios/App/App/NativeBottomSheetPlugin.swift	Waits for JS content readiness before clearing dismissal snapshot.
ios/App/App/LiquidTabsStore.swift	Adds native graph state, refresh state, and web tab transition readiness tracking.
ios/App/App/LiquidTabsRootView.swift	Adds native graphs tab UI and revises iOS search/tab navigation flows.
ios/App/App/LiquidTabsPlugin.swift	Adds native graph bridge methods/events and tab readiness support.
ios/App/App/AppDelegate.swift	Refines native stack bookkeeping, JS-originated pop suppression, and route observation.
docs/develop-logseq-on-mobile.md	Updates iOS mobile dev instructions for HTTPS Shadow CLJS workflow.
bb.edn	Adds a Babashka task for generating the mobile HTTPS certificate.
.gitignore	Ignores generated local SSL development artifacts.

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