signal-peptide

• signal_hsmm_nonparametricMB.R - working algorithm
• pub_pos_train.txt - training data
• pub_pos_test.txt - test data (signal peptides)
• pub_neg_test.txt - test data (without signal peptides)

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program for exploring properties of signal peptides.

functions.R - all important functions procedures.R - current training and test procedure

Requirements:

• dhmm package https://github.com/sobek44/dhmm (load by library(hsmm))

Other stuff:

• aagui - package for aminoacid clusterization https://github.com/michbur/aagui