0.1.10-alpha

This is a hotfix release that fixes a bug introduced in v0.1.9-alpha.

Bug fixes

• Fixes a bug introduced in v0.1.9-alpha that causes segmentation faults or undefined behaviour. triggered by read-pairs that overlap sufficiently to contain adapter sequence, and also contain indel variation in the overlapping subregion.
• Corrects a calculation in soft clip masking.

Improvements

• The runtime performance of the assembler has been slightly improved.
• When using the assembler, soft clipped read tails with low average quality will be masked.

Other changes

• The default value for --assembler-mask-base-quality has been changed to 5.