Skip to content

0.1.7-alpha

Pre-release
Pre-release

Choose a tag to compare

View all tags
@dancooke dancooke released this 17 Feb 16:20
· 3446 commits to master since this release
v0.1.7-alpha
de77323

This release contains bug fixes, and minor feature enhancements:

Bug fixes

  • Fixes a bug which in rare cases could lead to an infinite loop.
  • Fixes an error in the trio caller genotype posterior calculation, meaning samples would often get assigned a GQ of zero.
  • Fixes a performance bug in the trio model.

New features

  • A pedigree (.ped) file can now be specified with the option --pedigree. This can be used to invoke the trio calling model instead of specifying maternal and paternal samples. If exactly three samples are given, and the given pedigree contains those samples as a trio, then the trio calling model will be used.

Other changes

  • The default target read memory footprint limit (--target-read-buffer-footprint) has been increased to 4GB.
  • Static library linking is now possible by adding the --static option to the python installer.
  • Compiler warnings have been eliminated for Clang.
Assets 2
Loading