0.5.1-beta

This is a minor release that resolves a few issues in the first Beta release - v0.5.0-beta.

Improvements

• Adds support for allosomes in the trio calling model. [41b72b2]
• Moves the RFQUAL random forest score to the FORMAT field, so there is now one score for each sample. [81b75ea]
• Adds new measures: RTB, REB, BMC, BMF. [f1000d4, 1a937f2]
• Improves temp directory cleanup on failed runs. [95016f1]
• Makes random forest training a little easier by adding default measure lists to training scripts and by allowing the argument forest to the --training-annotations option (renamed from --csr-train). [519be06, 106e344]
• Changes some of the UMI config settings to reduce runtimes (at minor expensive of accuracy). [36e4729]

Interface changes

• Renames --csr-train option to --training-annotations. [a1f8c45]
• Adds version numbers to provided random forests. [3599999]
• Renames the RPB measure to RSB. [c52c6e8]

Bug fixes

• Resolves a libc++ bug where subnormal doubles are not parsed properly, causing errors when using random forest filtering. [dc13754]
• Fixes a possible segmentation fault when using the MQD measure. [45b9b74]
• Fixes a VCF reading bug that could mangle INFO and FORMAT fields with multiple values. [0078c5a]