v0.1.0
What's Changed
Breaking Changes
- Fix diff exp ebayes bug & fix temp dirs in notebooks by @vbrennsteiner in #133
- [API,Fix] Make Nanlog consistent by @lucas-diedrich in #155
Bug fixes
- [Fix] Fix badge for documentation deployment by @lucas-diedrich in #124
- Fix clone command URL in README by @lucas-diedrich in #134
- [Docs,Fix] Add all tutorials to docs by @lucas-diedrich in #137
- [Hotfix] Include tutorials into documentation by @lucas-diedrich in #151
- Mock alphaquant file output in DE unittest by @lucas-diedrich in #157
- [Bug] Fix installation instructions and only use pip by @lucas-diedrich in #175
- Fix bug in dev installation instructions by @lucas-diedrich in #176
- replace fragile int/float check with more generalized type check by @vbrennsteiner in #181
New Features
- List all available readers by @lucas-diedrich in #125
- Make search filter configurable by @lucas-diedrich in #136
- Coefficient of variation 2 - Groupwise metric by @lucas-diedrich in #130
- Coefficient of variation 1 - Feature level metric by @lucas-diedrich in #129
- Custom naming for BPCA by @lucas-diedrich in #153
- Bayesian Principal Component Analysis 1 | Embedding by @lucas-diedrich in #141
- Bayesian Principal Component Analysis 2 | Imputation by @lucas-diedrich in #142
Other Changes / unlabeled
- Remove vscode by @mschwoer in #122
- Pelsa peptidomics notebook by @vbrennsteiner in #110
- [Doc] Add installation instructions for pypi by @lucas-diedrich in #126
- Data module integration by @lucas-diedrich in #127
- [Dep] Fix pandas dependency by @lucas-diedrich in #135
- Remove inits from tests (not a package) by @lucas-diedrich in #128
- [Dep] Update alphabase dependency to 1.8.0 by @lucas-diedrich in #146
- Update tool docs by @lucas-diedrich in #149
- Expose
alphapepttools.tl.toolsfunctions by @lucas-diedrich in #148 - Improve impute gaussian by @vbrennsteiner in #139
- Return pca anndata by @shanibmo in #138
- rename into study and demo notebooks by @vbrennsteiner in #143
- Remove redundancy between BPCA and PCA methods by @lucas-diedrich in #152
- [Doc] Examples for
nanlogon copy/layer handling by @lucas-diedrich in #154 - Test loose and stable alphapepttools versions in CI/CD by @lucas-diedrich in #150
- [Dependencies] Remove most dependency restrictions by @lucas-diedrich in #147
- [CI/CD] Test with latest supported python version (3.13) by @lucas-diedrich in #158
- Fix README by @lucas-diedrich in #163
- Make alphaquant optional by @mschwoer in #165
- Make inmoose optional by @mschwoer in #166
- Remove sans serif font by @vbrennsteiner in #144
- remove leading underscore from metrics modules by @vbrennsteiner in #177
Full Changelog: v0.0.1...v0.1.0