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Martin Vickers edited this page Mar 15, 2017 · 14 revisions

Static Binary Installation

This is the easiest way to use ALFSC if you are starting out and your system is compatible with this. All you need to so is download the latest release and copy this either into your working directory for you to use.

  • Download the the latest release using wget
  • Use tar xvfz to uncompress and extract the binary
  • Run the program

e.g.

martin@desktop:~$ wget https://github.com/martinjvickers/alfsc/releases/download/testing_0.0.6/alfsc_testing_0.0.6.tar.gz
--2017-03-15 09:47:38--  https://github.com/martinjvickers/alfsc/releases/download/testing_0.0.6/alfsc_testing_0.0.6.tar.gz
Resolving github.com (github.com)... 192.30.253.113, 192.30.253.112
Connecting to github.com (github.com)|192.30.253.113|:443... connected.
HTTP request sent, awaiting response... 302 Found
Location: https://github-cloud.s3.amazonaws.com/releases/78658349/5712f148-04ba-11e7-8ead-bf334ad7b2fb.gz?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAISTNZFOVBIJMK3TQ%2F20170315%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20170315T094739Z&X-Amz-Expires=300&X-Amz-Signature=820e2588d18b1ed560c5ace297ca527e128279f91de0973005417b3f28afccb3&X-Amz-SignedHeaders=host&actor_id=0&response-content-disposition=attachment%3B%20filename%3Dalfsc_testing_0.0.6.tar.gz&response-content-type=application%2Foctet-stream [following]
--2017-03-15 09:47:39--  https://github-cloud.s3.amazonaws.com/releases/78658349/5712f148-04ba-11e7-8ead-bf334ad7b2fb.gz?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAISTNZFOVBIJMK3TQ%2F20170315%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20170315T094739Z&X-Amz-Expires=300&X-Amz-Signature=820e2588d18b1ed560c5ace297ca527e128279f91de0973005417b3f28afccb3&X-Amz-SignedHeaders=host&actor_id=0&response-content-disposition=attachment%3B%20filename%3Dalfsc_testing_0.0.6.tar.gz&response-content-type=application%2Foctet-stream
Resolving github-cloud.s3.amazonaws.com (github-cloud.s3.amazonaws.com)... 54.231.115.59
Connecting to github-cloud.s3.amazonaws.com (github-cloud.s3.amazonaws.com)|54.231.115.59|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 1151139 (1.1M) [application/octet-stream]
Saving to: ‘alfsc_testing_0.0.6.tar.gz’

100%[======================================>] 1,151,139   1.15MB/s   in 1.0s   

2017-03-15 09:47:41 (1.15 MB/s) - ‘alfsc_testing_0.0.6.tar.gz’ saved [1151139/1151139]

martin@desktop:~$ tar xvfz alfsc_testing_0.0.6.tar.gz 
alfsc
martin@desktop:~$ ./alfsc 
alfsc - Alignment-free sequence comparison.
===========================================
    alfsc -q query.fasta -r reference.fasta -o results.txt [OPTIONS]
    alfsc -p mydata.fasta -o results.txt [OPTIONS]
    Try 'alfsc --help' for more information.

VERSION
    Last update: March 2017
    alfsc version: 0.0.5
    SeqAn version: 2.2.1

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