Skip to content

Subset list to references with aligned reads to improve speed#3

Merged
maxibor merged 4 commits intomaxibor:masterfrom
alexhbnr:sparse_refs
Jul 29, 2021
Merged

Subset list to references with aligned reads to improve speed#3
maxibor merged 4 commits intomaxibor:masterfrom
alexhbnr:sparse_refs

Conversation

@alexhbnr
Copy link
Contributor

Removes overhead to perform operations on references that have no data aligned to them by subsetting the list of references to the ones with sequencing data.

alexhbnr added 2 commits July 29, 2021 15:50
Removes overhead to perform operations on references that have no data
aligned to them.
@maxibor
Copy link
Owner

maxibor commented Jul 29, 2021

Thanks for the suggestion @alexhbnr ! I didn't know the tqdm process_map, quite neat 😎 :

@maxibor maxibor merged commit 341c050 into maxibor:master Jul 29, 2021
@alexhbnr alexhbnr deleted the sparse_refs branch October 13, 2021 19:24
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants