HISAT2-pipeline v1.1.1-bioconda

• Fixed a regression bug causing stringtie to crash due to malformed paths

HISAT2-pipeline v1.1.1

• Fixed a regression bug causing stringtie to crash due to malformed paths

HISAT2-pipeline v1.1.0-bioconda

• Added parameters --hisat_options and --stringtie_options that allow passing additional options to HISAT2 and Stringtie
• SAM files are now converted to sorted BAM files on the fly

HISAT2-pipeline v1.1.0

• Added parameters --hisat_options and --stringtie_options that allow passing additional options to HISAT2 and Stringtie
• SAM files are now converted to sorted BAM files on the fly

HISAT2-pipeline v1.0.8-bioconda

• Added support for bzip2, xz and gzip compressed fasta and gff files
• Added support for bz2 compressed fastq files

HISAT2-pipeline v1.0.8

• Added support for bzip2, xz and gzip compressed fasta and gff files
• Added support for bz2 compressed fastq files

HISAT2-pipeline v1.0.7-bioconda

Fixed a bug where the custom outfolder path was not correct.

HISAT2-pipeline v1.0.7

Fixed a bug where the custom outfolder path was not correct.

HISAT2-pipeline v1.0.6-bioconda

Added --version parameter

HISAT2-pipeline v1.0.6

Bumped version to 1.0.6