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ANSWER: a web-tool for clinical genomics reporting

ANSWER can be used by clinical geneticists or pathologists to identify clinically actionable variants from next-generation sequencing data for the purposes of recommending personalized treatment options. 

Functions

The platform allows users to

• examine variant quality using the integrated genome viewer (IGV)
• add their own annotations that can be used in future cases
• filter variants based on their gene location, chromosomal feature or quality metrics
• generate a clinical report in PDF format or HL7 format that can be loaded into the providers electronic health record (EHR)

Visualization

• Integrated IGV
• Gene Expression FPKM Plots
• Mutational Signatures Plots
• Copy Number Alteration Coverage and B-Allele Frequency Plots

Deployment

Data Inputs

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