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@idfarbanecha idfarbanecha released this 02 Aug 14:34
v0.1.1-alpha
62eb439

Pipeline that searches and download genomes from NCBI's assembly database.

For this release assembly_finder:

  • Takes taxonomy identifiers or taxonomic ranks plus the number of assemblies to download as inputs in a tsv file.

  • Outputs a summary table listing information on the downloaded assemblies.

  • Has a search term that includes all assemblies except the ones from metagenomes (by default).

  • Has a filtering function that prioritizes reference or representative genomes (by default).

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