assembly_finder v0.4.0

Summary

• Input table requires column names now
• Auto complete of missing columns when input is a table
• Added a more flexible input search (assembly accessions, names...)
• Added retries in downloads
• Bug fixes
• updated README

Additions

• e38d74e Added input table examples
• 39db04a Added auto complete of missing columns in input table
• d5575c3 Added retries in download rules

Changes

• fbe383a Improved params names
• a1d8ebb d1cacbc Changed input search to support assembly names, accessions and uid
• 3f4f6f0 Renamed extensions param to suffix
• d6a8b96 Use column names in input table
• e9d7e70 Changed params ordering
• 8ed3daa Improved click help message (click choices)
• 43bac2f Snakemake args are now added with "--" (--force intead of force for example)
• 1bfd3c7 Updated documentation in README

Fixes

• 2f76629 Fixed index error when no fasta is downloaded
• 3f4f6f0 Fixed checksum extension bug