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Merged
TomAugspurger merged 15 commits into from
Sep 21, 2022
Merged

Update example notebooks for new pystac-client features #216

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dcc7686
datasets and quickstarts
Aug 15, 2022
6213bdc
tutorials
Aug 16, 2022
55fd4d8
rtc
Aug 16, 2022
b9c1d98
Merge remote-tracking branch 'origin/main' into feature/sign-inplace
Sep 19, 2022
05b3e04
Fixed merge conflicts
Sep 19, 2022
3fcbe37
Updated nclimgrid
Sep 19, 2022
a3da6fd
Updated
Sep 19, 2022
c24689d
Fixup, compat
Sep 19, 2022
21fd817
Linting
Sep 19, 2022
6d1ce6b
Rerun
Sep 19, 2022
87314b9
Fixed hrea
Sep 19, 2022
01f19bf
fixups
Sep 19, 2022
d660e85
fixups
Sep 19, 2022
ac39799
Fixup landcover
Sep 20, 2022
8951864
Updated mosaiks
Sep 20, 2022
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123 changes: 75 additions & 48 deletions datasets/3dep-lidar/3dep-lidar-cog-example.ipynb
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219 changes: 182 additions & 37 deletions datasets/3dep-lidar/3dep-lidar-copc-example.ipynb
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63 changes: 20 additions & 43 deletions datasets/3dep/3dep-seamless-example.ipynb
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106 changes: 51 additions & 55 deletions datasets/alos-palsar/alos-palsar-example.ipynb
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43 changes: 23 additions & 20 deletions datasets/aster-l1t/aster-l1t-example.ipynb
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11 changes: 5 additions & 6 deletions datasets/chesapeake/chesapeake-example.ipynb
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Expand Up @@ -69,7 +69,8 @@
],
"source": [
"catalog = pystac_client.Client.open(\n",
" \"https://pct-apis-staging.westeurope.cloudapp.azure.com/stac/\"\n",
" \"https://pct-apis-staging.westeurope.cloudapp.azure.com/stac/\",\n",
" modifier=planetary_computer.sign_inplace,\n",
")\n",
"\n",
"latitude = 39.29\n",
Expand Down Expand Up @@ -106,7 +107,7 @@
"name": "stdout",
"output_type": "stream",
"text": [
"https://landcoverdata.blob.core.windows.net/chesapeake/lu/BayWide_1m_LU_E1700000_N1960000.tif\n"
"https://landcoverdata.blob.core.windows.net/chesapeake/lu/BayWide_1m_LU_E1700000_N1960000.tif?st=2022-08-08T16%3A37%3A59Z&se=2022-08-16T16%3A37%3A59Z&sp=rl&sv=2021-06-08&sr=c&skoid=c85c15d6-d1ae-42d4-af60-e2ca0f81359b&sktid=72f988bf-86f1-41af-91ab-2d7cd011db47&skt=2022-08-09T16%3A37%3A58Z&ske=2022-08-16T16%3A37%3A58Z&sks=b&skv=2021-06-08&sig=8UW6710XVMKmP7BvKT4ZuULp87IR0bct2suXgk98RHA%3D\n"
]
}
],
Expand Down Expand Up @@ -392,9 +393,7 @@
"metadata": {},
"outputs": [],
"source": [
"ds = rioxarray.open_rasterio(\n",
" planetary_computer.sign(items[0].assets[\"data\"]).href\n",
").squeeze()"
"ds = rioxarray.open_rasterio(items[0].assets[\"data\"].href).squeeze()"
]
},
{
Expand Down Expand Up @@ -446,7 +445,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.10.5"
"version": "3.8.13"
},
"widgets": {
"application/vnd.jupyter.widget-state+json": {
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42 changes: 22 additions & 20 deletions datasets/chloris-biomass/chloris-biomass-example.ipynb
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89 changes: 40 additions & 49 deletions datasets/cil-gdpcir/cil-gdpcir-example.ipynb
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91 changes: 43 additions & 48 deletions datasets/cil-gdpcir/ensemble.ipynb
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21 changes: 12 additions & 9 deletions datasets/cil-gdpcir/indicators.ipynb
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Expand Up @@ -24,7 +24,6 @@
"# required to locate and authenticate with the stac collection\n",
"import planetary_computer\n",
"import pystac_client\n",
"import pystac\n",
"\n",
"# required to load a zarr array using xarray\n",
"import xarray as xr\n",
Expand All @@ -50,19 +49,16 @@
},
{
"cell_type": "code",
"execution_count": 2,
"execution_count": 6,
"id": "998e6893-4ddd-4be1-bf60-fd1139d53c95",
"metadata": {},
"outputs": [],
"source": [
"catalog = pystac_client.Client.open(\n",
" \"https://planetarycomputer.microsoft.com/api/stac/v1\"\n",
")\n",
"\n",
"collection_cc0 = pystac.read_file(\n",
" \"https://planetarycomputer.microsoft.com/api/stac/v1/collections/cil-gdpcir-cc0\" # noqa\n",
" \"https://planetarycomputer.microsoft.com/api/stac/v1\",\n",
" modifier=planetary_computer.sign_inplace,\n",
")\n",
"\n",
"collection_cc0 = catalog.get_collection(\"cil-gdpcir-cc0\")\n",
"items = catalog.search(\n",
" collections=[\"cil-gdpcir-cc0\"],\n",
" query={\n",
Expand Down Expand Up @@ -2421,7 +2417,14 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.8.13"
"version": "3.9.10"
},
"widgets": {
"application/vnd.jupyter.widget-state+json": {
"state": {},
"version_major": 2,
"version_minor": 0
}
}
},
"nbformat": 4,
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68 changes: 40 additions & 28 deletions datasets/copernicus-dem/copernicus-dem-example.ipynb
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33 changes: 17 additions & 16 deletions datasets/deltares-floods/deltares-floods-example.ipynb
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118 changes: 51 additions & 67 deletions datasets/deltares-water-availability/deltares-water-availability-example.ipynb
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13 changes: 6 additions & 7 deletions datasets/drcog-lulc/drcog-lulc-example.ipynb
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Expand Up @@ -69,7 +69,8 @@
],
"source": [
"catalog = pystac_client.Client.open(\n",
" \"https://planetarycomputer-staging.microsoft.com/api/stac/v1\"\n",
" \"https://planetarycomputer-staging.microsoft.com/api/stac/v1\",\n",
" modifier=planetary_computer.sign_inplace,\n",
")\n",
"\n",
"latitude = 39.55\n",
Expand Down Expand Up @@ -106,7 +107,7 @@
"name": "stdout",
"output_type": "stream",
"text": [
"https://landcoverdata.blob.core.windows.net/drcog-lulc/2018/DRCOG_2018_LULC_E3070000_N1710000.tif\n"
"https://landcoverdata.blob.core.windows.net/drcog-lulc/2018/DRCOG_2018_LULC_E3070000_N1710000.tif?st=2022-08-09T15%3A50%3A27Z&se=2022-08-17T15%3A50%3A27Z&sp=rl&sv=2021-06-08&sr=c&skoid=c85c15d6-d1ae-42d4-af60-e2ca0f81359b&sktid=72f988bf-86f1-41af-91ab-2d7cd011db47&skt=2022-08-10T15%3A50%3A26Z&ske=2022-08-17T15%3A50%3A26Z&sks=b&skv=2021-06-08&sig=xT0vYWWEtnu8JdQ7%2B/yIGe8Sr67tCr6GFH9CEekkJVs%3D\n"
]
}
],
Expand Down Expand Up @@ -305,7 +306,7 @@
"outputs": [],
"source": [
"classmap = requests.get(\n",
" f\"https://pct-apis-staging.westeurope.cloudapp.azure.com/data/legend/classmap/{collection.id}\" # noqa: E501\n",
" f\"https://planetarycomputer-staging.microsoft.com/api/data/v1/legend/classmap/{collection.id}\" # noqa: E501\n",
").json()\n",
"\n",
"colors = [matplotlib.colors.to_rgba([x / 255 for x in c]) for c in classmap.values()]\n",
Expand All @@ -331,9 +332,7 @@
"outputs": [],
"source": [
"item = items[0]\n",
"ds = rioxarray.open_rasterio(\n",
" planetary_computer.sign(item.assets[\"data\"]).href\n",
").squeeze()"
"ds = rioxarray.open_rasterio(item.assets[\"data\"].href).squeeze()"
]
},
{
Expand Down Expand Up @@ -383,7 +382,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.10.5"
"version": "3.8.13"
},
"widgets": {
"application/vnd.jupyter.widget-state+json": {
Expand Down
453 changes: 383 additions & 70 deletions datasets/eclipse/eclipse-example.ipynb
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23 changes: 7 additions & 16 deletions datasets/ecmwf-forecast/ecmwf-forecast-example.ipynb
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Expand Up @@ -14,26 +14,17 @@
},
{
"cell_type": "code",
"execution_count": 1,
"id": "93d57eb3-5847-47f5-9384-e9fa1b098ecd",
"execution_count": null,
"id": "667f654a",
"metadata": {},
"outputs": [
{
"data": {
"text/plain": [
"96"
]
},
"execution_count": 1,
"metadata": {},
"output_type": "execute_result"
}
],
"outputs": [],
"source": [
"import pystac_client\n",
"import planetary_computer\n",
"\n",
"catalog = pystac_client.Client.open(\n",
" \"https://planetarycomputer.microsoft.com/api/stac/v1\"\n",
" \"https://planetarycomputer.microsoft.com/api/stac/v1\",\n",
" modifier=planetary_computer.sign_inplace,\n",
")\n",
"search = catalog.search(\n",
" collections=[\"ecmwf-forecast\"],\n",
Expand Down Expand Up @@ -1146,7 +1137,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.8.12"
"version": "3.9.10"
}
},
"nbformat": 4,
Expand Down
44 changes: 18 additions & 26 deletions datasets/esa-worldcover/esa-worldcover-example.ipynb
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42 changes: 17 additions & 25 deletions datasets/fia/fia-example.ipynb
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16 changes: 7 additions & 9 deletions datasets/gap/gap-example.ipynb
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Expand Up @@ -23,10 +23,7 @@
"outputs": [],
"source": [
"import planetary_computer\n",
"\n",
"# Set the environment variable PC_SDK_SUBSCRIPTION_KEY, or set it here.\n",
"# The Hub sets PC_SDK_SUBSCRIPTION_KEY automatically.\n",
"# planetary_computer.settings.set_subscription_key(\"add your key here\")"
"import pystac_client"
]
},
{
Expand All @@ -45,9 +42,10 @@
"metadata": {},
"outputs": [],
"source": [
"from pystac_client import Client\n",
"\n",
"catalog = Client.open(\"https://planetarycomputer.microsoft.com/api/stac/v1\")\n",
"catalog = pystac_client.Client.open(\n",
" \"https://planetarycomputer.microsoft.com/api/stac/v1\",\n",
" modifier=planetary_computer.sign_inplace,\n",
")\n",
"gap = catalog.get_child(id=\"gap\")"
]
},
Expand Down Expand Up @@ -123,7 +121,7 @@
"source": [
"bbox = [-118.35, 36.5, -118, 36.75]\n",
"search = catalog.search(collections=\"gap\", bbox=bbox)\n",
"items = list(planetary_computer.sign(item) for item in search.get_items())\n",
"items = search.get_all_items()\n",
"print(f\"{len(items)} items found\")"
]
},
Expand All @@ -150,7 +148,7 @@
"from rasterio.crs import CRS\n",
"from rasterio.warp import transform_bounds\n",
"\n",
"assert items\n",
"\n",
"item = items[0]\n",
"\n",
"with rasterio.open(item.assets[\"data\"].href) as dataset:\n",
Expand Down
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